Gene detail

Detail information of GWHGAAZE026683

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00072.1	2.4057E-112	unnamed protein product [Coffea canephora]
COG	YP_008797956.1	2E-13	ubiquitin-conjugating enzyme E2-like protein
Swissprot	tr\|Q42540\|UBC7_ARATH	5E-102	Ubiquitin-conjugating enzyme E2 7
trEMBL	tr\|A0A068TVK0\|A0A068TVK0_COFCA	9E-113	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDP00072.1}
TAIR10	AT5G59300.1	1E-73	ubiquitin carrier protein 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	8550810	8555268	+
GWHAAZE00000008	mRNA	8550810	8555268	+
GWHAAZE00000008	exon	8550810	8550858	+
GWHAAZE00000008	exon	8550988	8551090	+
GWHAAZE00000008	exon	8551838	8551935	+
GWHAAZE00000008	exon	8552021	8552121	+
GWHAAZE00000008	exon	8554058	8554135	+
GWHAAZE00000008	exon	8554642	8555268	+
GWHAAZE00000008	CDS	8550810	8550858	+
GWHAAZE00000008	CDS	8550988	8551090	+
GWHAAZE00000008	CDS	8551838	8551935	+
GWHAAZE00000008	CDS	8552021	8552121	+
GWHAAZE00000008	CDS	8554058	8554135	+
GWHAAZE00000008	CDS	8554642	8554719	+
GWHAAZE00000008	three_prime_UTR	8554720	8555268	+

Transcript Sequence
>GWHTAAZE026717 ATGGCTTCTCCTTCCCAAGCTAGCCTACTCCTCCAGAAACAGCTCAGAGATCTCTGTAAGAATCCTGTTGATGGATTCTCGGCCGGTTTGGTTGATGAAAATAACTTATTCGAATGGAGTGTTACCATTATTGGACCACCTGATACGTTATATGATGGAGGTTTCTTTAATGCCATTATGACTTTTCCCCAAAATTACCCCAACAGCCCTCCATCCGTCAGGTTTACCTCGGAGATATGGCATCCTAATGTTTATCCTGATGGGAAGGTTTGCATTTCAATTCTTCACCCGCCTGGTGACGACCCGAATGGGTATGAGCTTGCCAGTGAACGCTGGACACCAGTCCATACTGTGGAGAGTATAGTTTTGAGCATCATATCAATGCTCTCTAGTCCTAATGACGAATCTCCGGCAAATGTGGAAGCCGCGAAGGAATGGAGAGAAAGAAGGGACGATTTCAAGAAGAAAGTTAGCCGCTGTGTGAGACGATCTCAAGAAATGATGTGACACCGGTGCCCAAAGAAACCTATCTCTGTTTGCTCCGTGTCATCATCGATCCTCAAAAAATCAAAAAAGTTAAAAAAGACGGTAATTATATTGGGCAGTTTGTGAGGGAAGTGGCTGTTGATTATTGGACTATATTCGTTGCAATGCGTAGAATTAGAGTTTTAAGTTTTTGGTTCTATATCAATTGCCTATGCCCCCCTTTTGTTTTCTATGTTCTTTTTTTTCCCTTTTTTCCCCCCTTGATTTATTTTCTTCTTTAGTTTGTTCTTTCTTTGGGAGATCTTTGTAAACTTGAAATTTGAAGAATTTTTGGGGTTGCTATTATTATCAGTAAGTTAAGATGTTTAATTTGGAGAGAGAAATGATTGATTTTGCTGGGATTAGTATGGCTGAAGCATTGTTGTACTATGTTTTAGAAGCTCTCTTTGCCAAGATTTGTTGTGAAAGCAGCTCTCAGCATTGGACGGTGTTCACTAGGAATTGTGTTTAACCAATTCAACTTAAACCTGAGTCTTTGTCTGGCCAAATGTTAAACACATTGTGGTAAGA

Network for GWHGAAZE026683

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00179.27	UQ_con	11	160	7.70E-52

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	UBC

KEGG pathway

KO	Enzyme	pathway	mapID
K10575	UBE2G1, UBC7	Protein processing in endoplasmic reticulum	map04141
K10575	UBE2G1, UBC7	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	82.524
	SRR3591706	second leaf	49.286
	SRR3591707	mature leaf	48.581
	SRR3591708	Shoot apex	65.837
	SRR3591709	Stem	83.213
	SRR3591710	White floral bud	88.173
	SRR3591711	White flower	89.131
	SRR3591712	Green floral bud	111.451
	SRR3591713	Yellow flower	89.194
SRP173429	SRR8316895	Juvenile bud stage	66.611
	SRR8316896	Juvenile bud stage	100.309
	SRR8316897	Juvenile bud stage	47.000
	SRR8316894	Third green stage	33.268
	SRR8316900	Third green stage	110.832
	SRR8316901	Third green stage	109.229
	SRR8316898	Complete white stage	54.017
	SRR8316899	Complete white stage	138.793
	SRR8316903	Complete white stage	73.425
	SRR8316902	Silver flowering stage	45.640
	SRR8316904	Silver flowering stage	53.450
	SRR8316905	Silver flowering stage	29.222
	SRR8316906	Gold flowering stage	81.951
	SRR8316907	Gold flowering stage	82.148
	SRR8316908	Gold flowering stage	75.510
SRP132670	SRR6706286	Control	84.556
	SRR6706287	Light intensity 50%	86.248
	SRR6706288	Light intensity 20%	94.289
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	132.352
	CNS0095593	Slightly white alabastrum(diploid) 2	122.816
	CNS0095594	Slightly white alabastrum(diploid) 3	139.224
	CNS0095595	Whole white alabastrum(diploid) 2	115.962
	CNS0095596	Whole white alabastrum(diploid) 3	118.696
	CNS0095597	Whole white alabastrum(diploid) 4	115.730
	CNS0095598	Silvery flower (diploied) 1	84.262
	CNS0095599	Silvery flower (diploied) 2	90.799
	CNS0095600	Silvery flower (diploied) 3	109.586
	CNS0095601	Golden flower (diploid) 1	80.782
	CNS0095602	Golden flower (diploid) 2	90.224
	CNS0095603	Golden flower (diploid) 3	88.225
	CNS0095604	Slightly white alabastrum(tetraploid) 1	116.420
	CNS0095605	Slightly white alabastrum(tetraploid) 2	115.555
	CNS0095606	Slightly white alabastrum(tetraploid) 3	109.524
	CNS0095607	Whole white alabastrum(tetraploid) 1	105.691
	CNS0095608	Whole white alabastrum(tetraploid) 2	111.179
	CNS0095609	Whole white alabastrum(tetraploid) 3	105.969
	CNS0095610	Silvery flower (tetraploid) 1	93.103
	CNS0095611	Silvery flower (tetraploid) 2	88.067
	CNS0095612	Silvery flower (tetraploid) 3	95.703
	CNS0095613	Golden flower (tetraploid) 1	82.147
	CNS0095614	Golden flower (tetraploid) 2	85.302
	CNS0095615	Golden flower (tetraploid) 3	68.400
CRA001975	CRR073297	Stem 1	96.933
	CRR073298	Stem 2	94.759
	CRR073299	Stem 3	90.262
	CRR073300	Leaf 1	103.293
	CRR073301	Leaf 2	107.662
	CRR073302	Leaf 3	119.981
	CRR073303	Juvenile bud 1	130.391
	CRR073304	Juvenile bud 2	101.359
	CRR073305	Juvenile bud 3	112.997
	CRR073306	Third green 1	85.998
	CRR073307	Third green 2	84.580
	CRR073308	Third green 3	85.296
	CRR073309	Second white 1	99.372
	CRR073310	Second white 2	80.840
	CRR073311	Second white 3	66.988
	CRR073312	Silver flowering 1	67.453
	CRR073313	Silver flowering 2	79.811
	CRR073314	Silver flowering 3	75.643
	CRR073315	Gold flowering 1	56.578
	CRR073316	Gold flowering 2	52.406
	CRR073317	Gold flowering 3	52.728
	CRR073318	Tawny withering 1	105.688
	CRR073319	Tawny withering 2	93.359
	CRR073320	Tawny withering 3	103.751