Detail information of GWHGAAZE026667


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP00100.13.57249E-93unnamed protein product [Coffea canephora]
COGYP_003526842.14E-10RNP-1 like RNA-binding protein
Swissprottr|Q8L3X8|SRC30_ARATH9E-43Serine/arginine-rich SC35-like splicing factor SCL30
trEMBLtr|A0A068TUY2|A0A068TUY2_COFCA1E-93Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313|EMBL:CDP00100.1}
TAIR10AT3G55460.17E-34SC35-like splicing factor 30

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene83748858378082-
GWHAAZE00000008mRNA83748858378082-
GWHAAZE00000008exon83778918378082-
GWHAAZE00000008exon83776568377733-
GWHAAZE00000008exon83763588376522-
GWHAAZE00000008exon83762438376283-
GWHAAZE00000008exon83757628375834-
GWHAAZE00000008exon83754858375655-
GWHAAZE00000008exon83748858375023-
GWHAAZE00000008five_prime_UTR83780648378082-
GWHAAZE00000008CDS83778918378063-
GWHAAZE00000008CDS83776568377733-
GWHAAZE00000008CDS83763588376522-
GWHAAZE00000008CDS83762438376283-
GWHAAZE00000008CDS83757628375834-
GWHAAZE00000008CDS83754858375655-
GWHAAZE00000008CDS83748858375023-
Transcript Sequence

Network for GWHGAAZE026667

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_1481171.10E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12900FUSIP1 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf65.443
SRR3591706second leaf44.341
SRR3591707mature leaf48.489
SRR3591708Shoot apex92.075
SRR3591709Stem73.285
SRR3591710White floral bud52.328
SRR3591711White flower69.173
SRR3591712Green floral bud56.383
SRR3591713Yellow flower63.476
SRP173429 SRR8316895Juvenile bud stage 46.846
SRR8316896Juvenile bud stage 62.247
SRR8316897Juvenile bud stage 22.557
SRR8316894Third green stage 26.937
SRR8316900Third green stage 64.016
SRR8316901Third green stage 65.474
SRR8316898Complete white stage 35.360
SRR8316899Complete white stage 109.347
SRR8316903Complete white stage 46.182
SRR8316902Silver flowering stage33.899
SRR8316904Silver flowering stage36.828
SRR8316905Silver flowering stage23.966
SRR8316906Gold flowering stage 88.477
SRR8316907Gold flowering stage 70.987
SRR8316908Gold flowering stage 67.537
SRP132670SRR6706286Control103.833
SRR6706287Light intensity 50%102.220
SRR6706288Light intensity 20%103.095
CNP0000432CNS0095592Slightly white alabastrum(diploid) 162.746
CNS0095593Slightly white alabastrum(diploid) 263.826
CNS0095594Slightly white alabastrum(diploid) 353.904
CNS0095595Whole white alabastrum(diploid) 248.740
CNS0095596Whole white alabastrum(diploid) 348.792
CNS0095597Whole white alabastrum(diploid) 443.306
CNS0095598Silvery flower (diploied) 168.888
CNS0095599Silvery flower (diploied) 261.576
CNS0095600Silvery flower (diploied) 359.028
CNS0095601Golden flower (diploid) 165.086
CNS0095602Golden flower (diploid) 266.215
CNS0095603Golden flower (diploid) 364.324
CNS0095604Slightly white alabastrum(tetraploid) 158.091
CNS0095605Slightly white alabastrum(tetraploid) 250.075
CNS0095606Slightly white alabastrum(tetraploid) 381.875
CNS0095607Whole white alabastrum(tetraploid) 137.301
CNS0095608Whole white alabastrum(tetraploid) 231.982
CNS0095609Whole white alabastrum(tetraploid) 349.854
CNS0095610Silvery flower (tetraploid) 159.011
CNS0095611Silvery flower (tetraploid) 249.287
CNS0095612Silvery flower (tetraploid) 333.181
CNS0095613Golden flower (tetraploid) 149.172
CNS0095614Golden flower (tetraploid) 261.293
CNS0095615Golden flower (tetraploid) 359.497
CRA001975CRR073297Stem 167.370
CRR073298Stem 265.791
CRR073299Stem 381.300
CRR073300Leaf 163.291
CRR073301Leaf 259.490
CRR073302Leaf 368.323
CRR073303Juvenile bud 150.248
CRR073304Juvenile bud 246.188
CRR073305Juvenile bud 360.495
CRR073306Third green 121.721
CRR073307Third green 231.810
CRR073308Third green 323.747
CRR073309Second white 125.642
CRR073310Second white 223.448
CRR073311Second white 321.129
CRR073312Silver flowering 117.362
CRR073313Silver flowering 219.715
CRR073314Silver flowering 316.118
CRR073315Gold flowering 137.614
CRR073316Gold flowering 238.649
CRR073317Gold flowering 335.223
CRR073318Tawny withering 162.189
CRR073319Tawny withering 258.439
CRR073320Tawny withering 367.103