Gene detail

Detail information of GWHGAAZE026650

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008233650.1	0	PREDICTED: L-type lectin-domain containing receptor kinase S.4 [Prunus mume]
COG	YP_004571825.1	2E-23	serine/threonine protein kinase
Swissprot	tr\|Q9M2S4\|LRKS4_ARATH	0	L-type lectin-domain containing receptor kinase S.4 (Precursor)
trEMBL	tr\|M5X633\|M5X633_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ21414.1}
TAIR10	AT3G55550.1	0	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	8121188	8123236	-
GWHAAZE00000008	mRNA	8121188	8123236	-
GWHAAZE00000008	exon	8121188	8123236	-
GWHAAZE00000008	CDS	8121188	8123236	-

Transcript Sequence
>GWHTAAZE026684 ATGGCCAAAACTCTGATAATATATTTTTCTCTCTTCATTTTCCATTCCTCTCTCTCTCAGCTCCACGACGAAGACTTCATCTACCAAGGCTTCAACAATCCATCCAACAACATAACCCTCAACGGCGTTGCACAAATCCAACCAAACGGTATCCTCAAACTCACCAACGACTCCAGCAGATTAATCGGCCACGCCTTTCACCCATCTTTAATCAAACTCAAAAACTCAACCACTGGAAAATCATTTTCCTTTTCCACTTCCTTCGCTTTCGCCATTGTCCCCGAGTACCAAACGCTCGGCGGCCATGGCCTAGCCTTCACAATCTCCACCACTAAGGAAATTCAGGGGTCGCTACCCAGACAGTATCTGGGGATTCTAAATACTACTAACAATGGTAACTTCTCCAACCATTTATTCGCAGTCGAATTCGACACTGTACAGGATTTGGAATTTCTTGATATCAATGATAATCATGTGGGGATCGACATTAATAGCCTAATCTCAAATGATTCTGTTCCAGCTGGCTATTTTGTTGAAGGAAATTCCTCCATACAGGATCTTAATCTCAAGAGTGGCAAGAGAATTCTAGCTTGGATCGACTACGATTCGATGAAAAACGAATTAAACGTCACACTTTCACTCTCTTCAACTAAACCTAGTTCGTCAATTTTGTCATTTCAACTAGATCTCTCTCCAATCTTCAATGAATACATGTATGTAGGCTTCTCTGCATCTACAGGCTTGCTTGCAAGCTATCACTATTTATTCGGATGGAGTTTCAAGGTAAACGGAGAAGCCCAATCGCTCGATCTCTCTTCTCTTCCTTCTTTACCTGGCCCCCAAAAGAATCATACGACTTTAATTGTAGGCGTATCGGTTTCTGCTATAGTTGTAATTATCATCACAATTACAATAACTTTGTATCTTGTTAGAAAGATAAGGAATATGGATGTGATCGAAGATTGGGAGCTCGATATTGGCCCTCATAGATTTTCCTACAAGGAGTTGAAAAAAGCAACCAAAGGATTCAGAGACAAACAACTACTCGGATTCGGAGGATTTGGCAAAGTTTACAAAGGAATTTTACCGAATTCGAGAACCGAAGTTGCAGTTAAGCGAATCTCGCATGAATCAAGGCAAGGTTTGCGTGAATTCGTGTCCGAAATTGCAAGTATTGGCCGATTACGCCATAGAAATATTGTGCAGCTATTAGGATGGTGTAGAAGAAGAGGAGATTTATTACTAGTGTATGATTTTATGGAAAATGGAAGCTTAGATAAGTACATTTACGAAAACCCTAAATTGATTTTGAATTGGGAACAGAGGATGAAAATCATCAAAGGAGCGGCTTCGGGTTTGTTGTATTTGCACGAAGAATGGGAGCAAACTGTGATTCACAGGGACATTAAGGCCGGTAATATTCTTTTAGATTCGGAGTTAAATGGAAGATTAGGAGATTTCGGACTAGCAAAATTATACGAGCACGGATCAAACCCTAGCACAACGAGAGTTGTGGGGACTTTAGGTTATTTGGCACCGGAGCTGACTAGGACCGGGAGGCCGGCGGTCAGCTCCGACGTGTTTGCATTCGGGGCATTGATGTTGGAGGTGGTGTGCGGGAGGAGGCCCGTGGAGGCCAAGGGGGCGCCGGAAGAGACGATATTGGTGGACTGGGTGTGGGAGAGGTGGAAGGAAGGGGCGGTGCTGGGAGTGGTAGATAAGAGATTGGAAGGGGAGTTCGATGAGATTGAGGCGGTGGTGGTCGTGAAATTGGGGTTGATGTGTTCGAATTATAGGGCGGAGCTAAGGCCGAGTATAAGGCAGGTGGTGAGGTACTTGGATGGGGAAGTGGGGATGCCGCCGGTTGTGGAGGCTCCGGGTGGTGGTGGTGGTAGTAGTGTTGGGTTTGAGGATTTTGTGCATTCTTATCCTTCGTCGGCGGAGAAGGTGAGTGCGTGGCCCGGAGGTGGTGCACGTGACGGAGATGGAGATGCTGAAGGTGGTTCTGATTCGCCAATATATTTCTCCGGCAAAGGGGACAGCACGTAG

Network for GWHGAAZE026650

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	24	274	7.90E-76
PF00069.26	Pkinase	344	548	3.30E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0030246	molecular_function	carbohydrate binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.941
	SRR3591706	second leaf	1.181
	SRR3591707	mature leaf	2.463
	SRR3591708	Shoot apex	0.852
	SRR3591709	Stem	1.141
	SRR3591710	White floral bud	1.277
	SRR3591711	White flower	2.532
	SRR3591712	Green floral bud	1.925
	SRR3591713	Yellow flower	2.071
SRP173429	SRR8316895	Juvenile bud stage	1.615
	SRR8316896	Juvenile bud stage	2.143
	SRR8316897	Juvenile bud stage	0.554
	SRR8316894	Third green stage	2.075
	SRR8316900	Third green stage	1.579
	SRR8316901	Third green stage	2.719
	SRR8316898	Complete white stage	0.827
	SRR8316899	Complete white stage	3.767
	SRR8316903	Complete white stage	1.099
	SRR8316902	Silver flowering stage	0.793
	SRR8316904	Silver flowering stage	1.006
	SRR8316905	Silver flowering stage	0.541
	SRR8316906	Gold flowering stage	3.531
	SRR8316907	Gold flowering stage	2.234
	SRR8316908	Gold flowering stage	3.541
SRP132670	SRR6706286	Control	4.905
	SRR6706287	Light intensity 50%	5.348
	SRR6706288	Light intensity 20%	5.337
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.068
	CNS0095593	Slightly white alabastrum(diploid) 2	3.405
	CNS0095594	Slightly white alabastrum(diploid) 3	2.599
	CNS0095595	Whole white alabastrum(diploid) 2	2.692
	CNS0095596	Whole white alabastrum(diploid) 3	0.980
	CNS0095597	Whole white alabastrum(diploid) 4	1.762
	CNS0095598	Silvery flower (diploied) 1	4.352
	CNS0095599	Silvery flower (diploied) 2	2.819
	CNS0095600	Silvery flower (diploied) 3	2.109
	CNS0095601	Golden flower (diploid) 1	1.653
	CNS0095602	Golden flower (diploid) 2	3.570
	CNS0095603	Golden flower (diploid) 3	3.363
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.664
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.764
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.136
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.953
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.778
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.797
	CNS0095610	Silvery flower (tetraploid) 1	2.938
	CNS0095611	Silvery flower (tetraploid) 2	2.541
	CNS0095612	Silvery flower (tetraploid) 3	0.699
	CNS0095613	Golden flower (tetraploid) 1	3.594
	CNS0095614	Golden flower (tetraploid) 2	5.993
	CNS0095615	Golden flower (tetraploid) 3	2.480
CRA001975	CRR073297	Stem 1	2.964
	CRR073298	Stem 2	3.945
	CRR073299	Stem 3	2.132
	CRR073300	Leaf 1	1.776
	CRR073301	Leaf 2	2.667
	CRR073302	Leaf 3	2.279
	CRR073303	Juvenile bud 1	1.557
	CRR073304	Juvenile bud 2	2.147
	CRR073305	Juvenile bud 3	1.895
	CRR073306	Third green 1	0.215
	CRR073307	Third green 2	0.200
	CRR073308	Third green 3	0.650
	CRR073309	Second white 1	1.178
	CRR073310	Second white 2	0.577
	CRR073311	Second white 3	0.926
	CRR073312	Silver flowering 1	0.902
	CRR073313	Silver flowering 2	0.424
	CRR073314	Silver flowering 3	0.890
	CRR073315	Gold flowering 1	2.479
	CRR073316	Gold flowering 2	3.060
	CRR073317	Gold flowering 3	1.741
	CRR073318	Tawny withering 1	3.128
	CRR073319	Tawny withering 2	2.236
	CRR073320	Tawny withering 3	2.878