Detail information of GWHGAAZE026649


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002264955.20PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Vitis vinifera]
COGYP_113939.13E-126ATP-dependent helicase HrpA
Swissprottr|Q38953|DHX8_ARATH0Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|B9HY36|B9HY36_POPTR0Uncharacterized protein {ECO:0000313|EMBL:EEF02319.2}
TAIR10AT5G13010.10RNA helicase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene80696798079086-
GWHAAZE00000008mRNA80696798079086-
GWHAAZE00000008exon80790818079086-
GWHAAZE00000008exon80787898078939-
GWHAAZE00000008exon80779748078195-
GWHAAZE00000008exon80770278077097-
GWHAAZE00000008exon80765948076837-
GWHAAZE00000008exon80758768076043-
GWHAAZE00000008exon80741958074340-
GWHAAZE00000008exon80739348074031-
GWHAAZE00000008exon80735758073683-
GWHAAZE00000008exon80732938073470-
GWHAAZE00000008exon80729478073176-
GWHAAZE00000008exon80726508072826-
GWHAAZE00000008exon80724548072525-
GWHAAZE00000008exon80721568072332-
GWHAAZE00000008exon80718848071945-
GWHAAZE00000008exon80715968071748-
GWHAAZE00000008exon80696798071281-
GWHAAZE00000008CDS80790818079086-
GWHAAZE00000008CDS80787898078939-
GWHAAZE00000008CDS80779748078195-
GWHAAZE00000008CDS80770278077097-
GWHAAZE00000008CDS80765948076837-
GWHAAZE00000008CDS80758768076043-
GWHAAZE00000008CDS80741958074340-
GWHAAZE00000008CDS80739348074031-
GWHAAZE00000008CDS80735758073683-
GWHAAZE00000008CDS80732938073470-
GWHAAZE00000008CDS80729478073176-
GWHAAZE00000008CDS80726508072826-
GWHAAZE00000008CDS80724548072525-
GWHAAZE00000008CDS80721568072332-
GWHAAZE00000008CDS80718848071945-
GWHAAZE00000008CDS80715968071748-
GWHAAZE00000008CDS80696798071281-
Transcript Sequence

Network for GWHGAAZE026649

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.30DEAD5967485.00E-07
PF00271.32Helicase_C7949231.10E-11
PF04408.24HA298710725.90E-22
PF07717.17OB_NTP_bind113112086.70E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12815DHX38, PRP16 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0005524molecular_functionATP binding
GO:0004386molecular_functionhelicase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.132
SRR3591706second leaf13.383
SRR3591707mature leaf15.020
SRR3591708Shoot apex23.375
SRR3591709Stem26.362
SRR3591710White floral bud26.925
SRR3591711White flower30.359
SRR3591712Green floral bud23.239
SRR3591713Yellow flower28.968
SRP173429 SRR8316895Juvenile bud stage 13.442
SRR8316896Juvenile bud stage 20.632
SRR8316897Juvenile bud stage 8.792
SRR8316894Third green stage 8.745
SRR8316900Third green stage 22.246
SRR8316901Third green stage 22.520
SRR8316898Complete white stage 9.265
SRR8316899Complete white stage 24.771
SRR8316903Complete white stage 20.613
SRR8316902Silver flowering stage14.591
SRR8316904Silver flowering stage22.430
SRR8316905Silver flowering stage10.568
SRR8316906Gold flowering stage 33.174
SRR8316907Gold flowering stage 33.565
SRR8316908Gold flowering stage 34.530
SRP132670SRR6706286Control25.145
SRR6706287Light intensity 50%25.487
SRR6706288Light intensity 20%25.945
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.938
CNS0095593Slightly white alabastrum(diploid) 215.486
CNS0095594Slightly white alabastrum(diploid) 315.142
CNS0095595Whole white alabastrum(diploid) 214.330
CNS0095596Whole white alabastrum(diploid) 314.588
CNS0095597Whole white alabastrum(diploid) 415.638
CNS0095598Silvery flower (diploied) 121.176
CNS0095599Silvery flower (diploied) 216.839
CNS0095600Silvery flower (diploied) 333.760
CNS0095601Golden flower (diploid) 117.987
CNS0095602Golden flower (diploid) 235.842
CNS0095603Golden flower (diploid) 334.048
CNS0095604Slightly white alabastrum(tetraploid) 117.054
CNS0095605Slightly white alabastrum(tetraploid) 215.708
CNS0095606Slightly white alabastrum(tetraploid) 325.175
CNS0095607Whole white alabastrum(tetraploid) 117.537
CNS0095608Whole white alabastrum(tetraploid) 215.803
CNS0095609Whole white alabastrum(tetraploid) 320.524
CNS0095610Silvery flower (tetraploid) 136.532
CNS0095611Silvery flower (tetraploid) 239.061
CNS0095612Silvery flower (tetraploid) 334.437
CNS0095613Golden flower (tetraploid) 122.527
CNS0095614Golden flower (tetraploid) 233.185
CNS0095615Golden flower (tetraploid) 338.515
CRA001975CRR073297Stem 130.321
CRR073298Stem 230.102
CRR073299Stem 325.958
CRR073300Leaf 133.690
CRR073301Leaf 229.700
CRR073302Leaf 318.583
CRR073303Juvenile bud 127.383
CRR073304Juvenile bud 219.185
CRR073305Juvenile bud 335.251
CRR073306Third green 117.786
CRR073307Third green 213.364
CRR073308Third green 318.632
CRR073309Second white 118.279
CRR073310Second white 221.780
CRR073311Second white 323.262
CRR073312Silver flowering 124.226
CRR073313Silver flowering 226.947
CRR073314Silver flowering 321.351
CRR073315Gold flowering 19.442
CRR073316Gold flowering 215.608
CRR073317Gold flowering 311.635
CRR073318Tawny withering 121.902
CRR073319Tawny withering 217.519
CRR073320Tawny withering 320.159