Gene detail

Detail information of GWHGAAZE026642

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00134.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|P49598\|P2C37_ARATH	5E-142	Protein phosphatase 2C 37
trEMBL	tr\|A0A068TW06\|A0A068TW06_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDP00134.1}
TAIR10	AT3G11410.1	8E-112	protein phosphatase 2CA

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	7945598	7947110	-
GWHAAZE00000008	mRNA	7945598	7947110	-
GWHAAZE00000008	exon	7945598	7945932	-
GWHAAZE00000008	exon	7946036	7946141	-
GWHAAZE00000008	exon	7946241	7946561	-
GWHAAZE00000008	exon	7946664	7947110	-
GWHAAZE00000008	CDS	7946664	7947110	-
GWHAAZE00000008	CDS	7946241	7946561	-
GWHAAZE00000008	CDS	7946036	7946141	-
GWHAAZE00000008	CDS	7945598	7945932	-

Transcript Sequence
>GWHTAAZE026676 ATGGCTGGGATGTATAGTGGTCTTGGTGGTGAGACGGAGACATCTGCTCCGGTTGAGCCGAGTTCACGATCGGCAAGGAGGCGGAGGATGGAAGTCCATCAGTTCAACATCGTGCCCACGGATATGGCCGTGAATCCGCCGGAGAACGGCCGGAAGCGTCCGAGAATCGAGGCCGTTTTTGCTCCGGTTCAGAGTTGTGGTGTGATGACGAAGAGCGGAGAATCGAACACGGAGTCTTTGGATAGCTGTGGTTCTGTTTCGTTGGCGGCGAATATAGAGAGTGAGGTGGTTCAGGAGGTTCCTAAGTTCGGTTTGACTTCGGTTTGTGGAAGGCGGAGAGACATGGAAGATGCTGTGGCGGTTCATCCTTCGTTTTGCTCTACAGATCGTCAAAAATCTAGTGATGTTCATTTCTATGGTGTCTATGACGGCCATGGTTGCTCACATGTCGCGATGAAGTGTAAGGATCGAATGCACGAAATAGTGAAAGAGGAGCTGGAGAATGGGGAAGAACGTTGTCCATGGAACGATGCGATGAAGCAAAGCTTCTCGCGTATGGACGAGGAGATAACGGAGTGGAGCAACAACGCTGGTGTTTCCAACTCGAATTGCCGGTGCGAACTCCAAACGCCTCAGTGCGACGCCGTCGGATCGACCGCTGTGGTCGCCGTCGTGACTCCGGAGAAACTAATCGTCTCCAACTGCGGCGATTCTCGTGCAGTCCTTTGCCGTAAAGGCGTTGCTATTCCTCTCTCATCCGATCACAAGCCTGATCGACCGGATGAACTCCAACGAATAGAAGAAGCCGGCGGCCGTGTTATATACTGGGACGGCGCTCGAGTTCTGGGAGTTTTAGCTATGTCTAGAGCAATCGGGGATAACTATTTGAAGCCGTACGTGATACCGGAACCGGAAGTAACCGTAACGGATCGGACAGTGGAAGATGAGTTCCTGATTCTGGCAAGTGACGGACTGTGGGACGTGGTGTCTAACGAAACCGCATGCGGAGTTGCTATGATGTGCTTGCGAGGGCAGAAGCCGCCATCTCCACCGCGGTCTCCTGGTGGCAACGACGGCTCAATGGCCGCTGGCGAGTGCTCCGATAAGGCATGTTCCGATGCTTCGATATTATTGACGAAATTAGCCCTGGCTAGGCATAGCACGGATAACGTGAGCGTAGTGGTGGTGGATTTGAAAAAGATACTATAG

Network for GWHGAAZE026642

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	103	370	5.00E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14497	PP2C	MAPK signaling pathway - plant	map04016
K14497	PP2C	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	240.871
	SRR3591706	second leaf	168.484
	SRR3591707	mature leaf	214.959
	SRR3591708	Shoot apex	201.724
	SRR3591709	Stem	238.928
	SRR3591710	White floral bud	436.463
	SRR3591711	White flower	462.958
	SRR3591712	Green floral bud	172.680
	SRR3591713	Yellow flower	524.365
SRP173429	SRR8316895	Juvenile bud stage	120.560
	SRR8316896	Juvenile bud stage	169.833
	SRR8316897	Juvenile bud stage	79.040
	SRR8316894	Third green stage	42.491
	SRR8316900	Third green stage	124.676
	SRR8316901	Third green stage	200.645
	SRR8316898	Complete white stage	246.148
	SRR8316899	Complete white stage	390.681
	SRR8316903	Complete white stage	329.620
	SRR8316902	Silver flowering stage	291.233
	SRR8316904	Silver flowering stage	283.313
	SRR8316905	Silver flowering stage	191.201
	SRR8316906	Gold flowering stage	605.200
	SRR8316907	Gold flowering stage	588.438
	SRR8316908	Gold flowering stage	538.289
SRP132670	SRR6706286	Control	160.422
	SRR6706287	Light intensity 50%	164.365
	SRR6706288	Light intensity 20%	170.367
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	134.545
	CNS0095593	Slightly white alabastrum(diploid) 2	125.983
	CNS0095594	Slightly white alabastrum(diploid) 3	113.395
	CNS0095595	Whole white alabastrum(diploid) 2	102.596
	CNS0095596	Whole white alabastrum(diploid) 3	74.081
	CNS0095597	Whole white alabastrum(diploid) 4	95.130
	CNS0095598	Silvery flower (diploied) 1	217.769
	CNS0095599	Silvery flower (diploied) 2	289.495
	CNS0095600	Silvery flower (diploied) 3	538.720
	CNS0095601	Golden flower (diploid) 1	260.121
	CNS0095602	Golden flower (diploid) 2	436.693
	CNS0095603	Golden flower (diploid) 3	429.590
	CNS0095604	Slightly white alabastrum(tetraploid) 1	61.797
	CNS0095605	Slightly white alabastrum(tetraploid) 2	56.992
	CNS0095606	Slightly white alabastrum(tetraploid) 3	100.777
	CNS0095607	Whole white alabastrum(tetraploid) 1	63.070
	CNS0095608	Whole white alabastrum(tetraploid) 2	52.706
	CNS0095609	Whole white alabastrum(tetraploid) 3	108.032
	CNS0095610	Silvery flower (tetraploid) 1	429.371
	CNS0095611	Silvery flower (tetraploid) 2	546.567
	CNS0095612	Silvery flower (tetraploid) 3	617.993
	CNS0095613	Golden flower (tetraploid) 1	369.882
	CNS0095614	Golden flower (tetraploid) 2	414.070
	CNS0095615	Golden flower (tetraploid) 3	808.608
CRA001975	CRR073297	Stem 1	264.073
	CRR073298	Stem 2	281.306
	CRR073299	Stem 3	357.553
	CRR073300	Leaf 1	384.775
	CRR073301	Leaf 2	492.132
	CRR073302	Leaf 3	314.081
	CRR073303	Juvenile bud 1	316.094
	CRR073304	Juvenile bud 2	359.703
	CRR073305	Juvenile bud 3	374.905
	CRR073306	Third green 1	1104.954
	CRR073307	Third green 2	890.476
	CRR073308	Third green 3	663.892
	CRR073309	Second white 1	849.818
	CRR073310	Second white 2	859.463
	CRR073311	Second white 3	652.948
	CRR073312	Silver flowering 1	843.566
	CRR073313	Silver flowering 2	946.281
	CRR073314	Silver flowering 3	961.728
	CRR073315	Gold flowering 1	184.465
	CRR073316	Gold flowering 2	216.281
	CRR073317	Gold flowering 3	146.573
	CRR073318	Tawny withering 1	193.824
	CRR073319	Tawny withering 2	224.509
	CRR073320	Tawny withering 3	198.766