Gene detail

Detail information of GWHGAAZE026603

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007009091.1	RNI-like superfamily protein [Theobroma cacao]
Swissprot	tr\|O04197\|COI1_ARATH	Coronatine-insensitive protein 1
trEMBL	tr\|A0A061FLC7\|A0A061FLC7_THECC	RNI-like superfamily protein {ECO:0000313\|EMBL:EOY17901.1}
TAIR10	AT2G39940.1	RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	7246591	7253263	+
GWHAAZE00000008	mRNA	7246591	7253263	+
GWHAAZE00000008	exon	7246591	7247072	+
GWHAAZE00000008	exon	7250903	7251374	+
GWHAAZE00000008	exon	7252457	7253263	+
GWHAAZE00000008	CDS	7246591	7247072	+
GWHAAZE00000008	CDS	7250903	7251374	+
GWHAAZE00000008	CDS	7252457	7253263	+

Transcript Sequence
>GWHTAAZE026637 ATGGTGGATCGAAACGTGAACAGGATGAACAACGCCATGTCGGAAGTGGTATTCGGCTGTGTGGTACCGTACATACACGATTCCCGAGACCGTGACGCGGTTTCTCTGGTATGCAGGCGGTGGTACGAGCTCGATGCTCTAACTCGGAAGCACGTGACAATTGCTCTGTGTTATACGACGACGCCGAGGCAGTTGTGCAGGAGATTTAAGCACCTTGATTCGTTGAAGCTCAAGGGGAAGCCGAGAGCCGCGATGTTTAATTTGATACCAGAGGATTGGGGAGGGTATGTCACTCCGTGGGTGGAGGAGATTGCTAGGTCTTTTACTTGCTTGAAGGCGATTCACTTTAGGCGTATGATTGTTAAGGATTCGGATCTTGATGTACTTGCTAGGTCGAGGGGTTTAGGGCTTGAAGTATTTAAGCTTGATAAGTGCTCTGGTTTTTCTACGGATGGCCTTCTGCATATTACTGGACGGTGCAGGAATTTGAAGACCTTGTTTCTAGAAGAGAGCACAATCACTGAGAAGGATGGTGAATGGCTACATGAGCTTGCTTCAAACAACACGGCACTCGAGACATTGAACTTCTACATGACCGATCTAGCCAAAGTCAGATTTGAAGACCTCGAACTCATAGCTAGAAATTGTAAATCGTTAGTCTCGGTGAAAATTAGCGATTGTGAAATTCTGGATTTGGTTGGTTTCTTTCGGGCTGCAACTTCACTAGAAGAGTTTGGTGGGGGCTCCTTCAACGATCAACCAGAATTGTATTCTTCTGTAACATTTCCAAGGAGATTATCACTCTTGGGTCTCACTTACATGGGAAAGAACGAAATGCCCATCGTTTTCCCTTTTGCATACCAACTAAGAAAACTCGATCTCCTCTATGCTCTACTTGATACAGAGGATCACTGTCACTTGATTGAACGCTGCCCCAACTTGGAAATTCTCGAGACAAGGAATGTTATTGGAGATAGAGGATTAGAAGTACTTGCACGATGTTGCAAGAGATTGAAGAGGCTAAGGATTGAACGGGGTGCCGACGAACAAGAAATGGAGGACGAAGAAGGCCTAGTTTCACAAAGAGGATTGATCGCCCTGGCCCATGGCTGCCCCGAATTGGAATACTTGGCTGTATACGTATCCGACATCACCAACGCGTCCCTCGAATGCATGGGGGAACACTTAAAAAACCTAAACGATTTTCGACTAGTCCTACTTGACCGAGAAGAGAGAATAACCGATTTACCCCTCGACAATGGGGTCCAAGCCCTCTTGAGAGGCTGCCAGCTCAGACGGTTTGCTCTGTACCTCCGTCCTGGGGGCTTGACTGACGTGGGTCTCGGCTACATTGGACGGTATAGCCAAAACGTTCGGTGGATGCTTCTAGGCTACGTTGGTGGGTCCGATGAAGGGCTCCTTGAGTTCTCTAAGGGCTGCCCTAGCCTTCAAAAGCTAGAAATGAGGGGTTGTTGCTTTAGTGAGCGGGCGCTGGCTATTGCAGTGTTGCAGCTAAGTTCTCTTAGGTACTTGTGGGTCCAAGGATATAGATCGTCACCGGGTAATCGGGATCTTTTAGCTATGGTTCGACCGTTTTGGAATATTGAGTTGATTCCCTCAAGGGGGGTGGTTAATGATCCCAATGAAGCTGTACTTGTTGAGCACCCGGCTCATATACTTGCGTATTATTCTTTGGCAGGACAAAGAACGGATTTTCCCGATACCGTTATACCATTGGACCCTTATTCTCTCTCTACATAG

Network for GWHGAAZE026603

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18511.2	F-box_5	12	51	1.20E-20
PF18791.2	Transp_inhibit	71	116	3.60E-23

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K13463	COI-1	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.923
	SRR3591706	second leaf	23.852
	SRR3591707	mature leaf	36.348
	SRR3591708	Shoot apex	21.782
	SRR3591709	Stem	38.104
	SRR3591710	White floral bud	58.276
	SRR3591711	White flower	43.492
	SRR3591712	Green floral bud	31.476
	SRR3591713	Yellow flower	17.334
SRP173429	SRR8316895	Juvenile bud stage	10.276
	SRR8316896	Juvenile bud stage	10.069
	SRR8316897	Juvenile bud stage	4.024
	SRR8316894	Third green stage	5.920
	SRR8316900	Third green stage	19.053
	SRR8316901	Third green stage	17.063
	SRR8316898	Complete white stage	13.846
	SRR8316899	Complete white stage	39.046
	SRR8316903	Complete white stage	22.543
	SRR8316902	Silver flowering stage	8.510
	SRR8316904	Silver flowering stage	12.896
	SRR8316905	Silver flowering stage	7.267
	SRR8316906	Gold flowering stage	13.190
	SRR8316907	Gold flowering stage	9.510
	SRR8316908	Gold flowering stage	15.815
SRP132670	SRR6706286	Control	13.061
	SRR6706287	Light intensity 50%	15.342
	SRR6706288	Light intensity 20%	16.245
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.069
	CNS0095593	Slightly white alabastrum(diploid) 2	13.166
	CNS0095594	Slightly white alabastrum(diploid) 3	10.926
	CNS0095595	Whole white alabastrum(diploid) 2	15.002
	CNS0095596	Whole white alabastrum(diploid) 3	12.414
	CNS0095597	Whole white alabastrum(diploid) 4	13.759
	CNS0095598	Silvery flower (diploied) 1	19.319
	CNS0095599	Silvery flower (diploied) 2	16.093
	CNS0095600	Silvery flower (diploied) 3	29.205
	CNS0095601	Golden flower (diploid) 1	11.580
	CNS0095602	Golden flower (diploid) 2	19.359
	CNS0095603	Golden flower (diploid) 3	17.258
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.685
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.884
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.546
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.894
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.333
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.814
	CNS0095610	Silvery flower (tetraploid) 1	29.049
	CNS0095611	Silvery flower (tetraploid) 2	31.601
	CNS0095612	Silvery flower (tetraploid) 3	45.617
	CNS0095613	Golden flower (tetraploid) 1	15.867
	CNS0095614	Golden flower (tetraploid) 2	24.544
	CNS0095615	Golden flower (tetraploid) 3	13.858
CRA001975	CRR073297	Stem 1	15.351
	CRR073298	Stem 2	14.234
	CRR073299	Stem 3	15.525
	CRR073300	Leaf 1	19.117
	CRR073301	Leaf 2	19.541
	CRR073302	Leaf 3	15.894
	CRR073303	Juvenile bud 1	22.839
	CRR073304	Juvenile bud 2	16.837
	CRR073305	Juvenile bud 3	26.682
	CRR073306	Third green 1	39.074
	CRR073307	Third green 2	32.062
	CRR073308	Third green 3	34.088
	CRR073309	Second white 1	23.615
	CRR073310	Second white 2	23.259
	CRR073311	Second white 3	19.310
	CRR073312	Silver flowering 1	10.425
	CRR073313	Silver flowering 2	14.639
	CRR073314	Silver flowering 3	14.615
	CRR073315	Gold flowering 1	10.354
	CRR073316	Gold flowering 2	9.852
	CRR073317	Gold flowering 3	9.684
	CRR073318	Tawny withering 1	21.336
	CRR073319	Tawny withering 2	15.436
	CRR073320	Tawny withering 3	25.302