Gene detail

Detail information of GWHGAAZE026596

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008441439.1	0	PREDICTED: eukaryotic translation initiation factor 3 subunit F [Cucumis melo]
Swissprot	tr\|O04202\|EIF3F_ARATH	5E-161	Eukaryotic translation initiation factor 3 subunit F {ECO:0000255\|HAMAP-Rule:MF_03005}
trEMBL	tr\|A0A0A0K7P9\|A0A0A0K7P9_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN45775.1}
TAIR10	AT2G39990.1	2E-121	eukaryotic translation initiation factor 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	7135085	7140245	+
GWHAAZE00000008	mRNA	7135085	7140245	+
GWHAAZE00000008	exon	7135085	7135306	+
GWHAAZE00000008	exon	7135988	7136067	+
GWHAAZE00000008	exon	7137840	7138069	+
GWHAAZE00000008	exon	7139262	7139383	+
GWHAAZE00000008	exon	7139474	7139587	+
GWHAAZE00000008	exon	7140156	7140245	+
GWHAAZE00000008	CDS	7135085	7135306	+
GWHAAZE00000008	CDS	7135988	7136067	+
GWHAAZE00000008	CDS	7137840	7138069	+
GWHAAZE00000008	CDS	7139262	7139383	+
GWHAAZE00000008	CDS	7139474	7139587	+
GWHAAZE00000008	CDS	7140156	7140245	+

Transcript Sequence
>GWHTAAZE026630 ATGGCGTCCACAGACCAGACAGTCTTGCAATTCTTCCCTTCTCCGGCGAGTGTGACGGCGAAGGTTCACCCCCTTGTCATATTCAATATATGCGATTGCTTCGTGAGGCGGCCGGACCAAGCCGAGAGAGTCATCGGTACTCTCCTCGGCTCTGTTTTGCCTGATGGTACTGTCGATATTCGTAACTCATATGCCGTTCCACACAACGAGTCTTCTGATCAGGTTGCATTGGATATTGATTACCATCACAATATGCTAGCATCCCACCAGAAAGTGAACCCAAAGGAAGTTATTGTTGGATGGTTTTCAACTGGATCTGGAGTCACTGGCGGTAGTGCTCTGATTCATGAATTTTATTCTAGAGAAGCTCCAAATCCTGTTCATCTGATTGTAGACACGGGATTCACTAATGGGGAGGCCACCATTAAAGCTTTTGTTTCTGTTAGCTTATCTCTAGGAGATCAACAACTTGCTGCCCAATTTCAAGAAATTCCATTGGATCTACGCATGGTTGAAGCCGAGCGGGTTGGGTTCGACATTCTCAAGACAACAGCGGTCGACAAGCTCCCGAATGATTTGGAAGGAATGGAAGCTTCAATGGAACGGTTACTAACCCTAATTGACGATGTCTACAAATATGTCGATGATGTTGTTGAAGGGCGTGTTGCACCGGACAATAACATTGGAAGATTTTTATCTGATAGCGTGGCCTCCATTCCAAAATTATCTCCCCCAGCTTTTGATAAGCTTGTCAACGATAGTATACAGGACCAATTGCTATTACTATATTTATCAAGCATCACAAGAACTCAGCTCAGCTTAGCAGAGAAGTTGAACACTGCTGCTCAAATTCTGTAA

Network for GWHGAAZE026596

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01398.22	JAB	18	124	7.60E-23
PF13012.7	MitMem_reg	172	278	2.00E-22

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	JAMM

KEGG pathway

KO	Enzyme	pathway	mapID
K03249	EIF3F	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006413	biological_process	translational initiation
GO:0005852	cellular_component	eukaryotic translation initiation factor 3 complex
GO:0005515	molecular_function	protein binding
GO:0003743	molecular_function	translation initiation factor activity
GO:0031369	molecular_function	translation initiation factor binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	87.435
	SRR3591706	second leaf	45.867
	SRR3591707	mature leaf	26.757
	SRR3591708	Shoot apex	96.899
	SRR3591709	Stem	46.312
	SRR3591710	White floral bud	53.618
	SRR3591711	White flower	78.250
	SRR3591712	Green floral bud	82.040
	SRR3591713	Yellow flower	61.220
SRP173429	SRR8316895	Juvenile bud stage	53.710
	SRR8316896	Juvenile bud stage	68.102
	SRR8316897	Juvenile bud stage	32.878
	SRR8316894	Third green stage	30.144
	SRR8316900	Third green stage	91.481
	SRR8316901	Third green stage	84.820
	SRR8316898	Complete white stage	33.756
	SRR8316899	Complete white stage	96.268
	SRR8316903	Complete white stage	40.154
	SRR8316902	Silver flowering stage	36.821
	SRR8316904	Silver flowering stage	41.077
	SRR8316905	Silver flowering stage	21.224
	SRR8316906	Gold flowering stage	64.328
	SRR8316907	Gold flowering stage	68.929
	SRR8316908	Gold flowering stage	76.130
SRP132670	SRR6706286	Control	83.174
	SRR6706287	Light intensity 50%	86.769
	SRR6706288	Light intensity 20%	94.762
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	69.071
	CNS0095593	Slightly white alabastrum(diploid) 2	76.938
	CNS0095594	Slightly white alabastrum(diploid) 3	74.433
	CNS0095595	Whole white alabastrum(diploid) 2	63.456
	CNS0095596	Whole white alabastrum(diploid) 3	66.131
	CNS0095597	Whole white alabastrum(diploid) 4	50.734
	CNS0095598	Silvery flower (diploied) 1	53.860
	CNS0095599	Silvery flower (diploied) 2	43.136
	CNS0095600	Silvery flower (diploied) 3	61.439
	CNS0095601	Golden flower (diploid) 1	39.648
	CNS0095602	Golden flower (diploid) 2	48.341
	CNS0095603	Golden flower (diploid) 3	46.151
	CNS0095604	Slightly white alabastrum(tetraploid) 1	63.796
	CNS0095605	Slightly white alabastrum(tetraploid) 2	59.788
	CNS0095606	Slightly white alabastrum(tetraploid) 3	90.876
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.721
	CNS0095608	Whole white alabastrum(tetraploid) 2	40.288
	CNS0095609	Whole white alabastrum(tetraploid) 3	75.880
	CNS0095610	Silvery flower (tetraploid) 1	56.186
	CNS0095611	Silvery flower (tetraploid) 2	55.445
	CNS0095612	Silvery flower (tetraploid) 3	48.265
	CNS0095613	Golden flower (tetraploid) 1	40.874
	CNS0095614	Golden flower (tetraploid) 2	52.832
	CNS0095615	Golden flower (tetraploid) 3	47.233
CRA001975	CRR073297	Stem 1	73.105
	CRR073298	Stem 2	68.991
	CRR073299	Stem 3	81.953
	CRR073300	Leaf 1	70.585
	CRR073301	Leaf 2	75.458
	CRR073302	Leaf 3	88.288
	CRR073303	Juvenile bud 1	83.007
	CRR073304	Juvenile bud 2	79.852
	CRR073305	Juvenile bud 3	88.088
	CRR073306	Third green 1	31.129
	CRR073307	Third green 2	29.847
	CRR073308	Third green 3	30.476
	CRR073309	Second white 1	62.522
	CRR073310	Second white 2	38.881
	CRR073311	Second white 3	36.793
	CRR073312	Silver flowering 1	45.046
	CRR073313	Silver flowering 2	50.356
	CRR073314	Silver flowering 3	43.898
	CRR073315	Gold flowering 1	53.152
	CRR073316	Gold flowering 2	56.165
	CRR073317	Gold flowering 3	51.637
	CRR073318	Tawny withering 1	82.400
	CRR073319	Tawny withering 2	74.183
	CRR073320	Tawny withering 3	100.380