Detail information of GWHGAAZE026591


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002268645.12.4002E-167PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
COGNP_280019.12E-25acidic ribosomal protein P0
Swissprottr|P50346|RLA0_SOYBN1E-16060S acidic ribosomal protein P0
trEMBLtr|F6HC03|F6HC03_VITVI9E-168Putative uncharacterized protein {ECO:0000313|EMBL:CCB49883.1}
TAIR10AT2G40010.12E-119Ribosomal protein L10 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene70709437073258+
GWHAAZE00000008mRNA70709437073258+
GWHAAZE00000008exon70709437071200+
GWHAAZE00000008exon70712857071353+
GWHAAZE00000008exon70714347071496+
GWHAAZE00000008exon70726957072793+
GWHAAZE00000008exon70728817073258+
GWHAAZE00000008CDS70709437071200+
GWHAAZE00000008CDS70712857071353+
GWHAAZE00000008CDS70714347071496+
GWHAAZE00000008CDS70726957072793+
GWHAAZE00000008CDS70728817073258+
Transcript Sequence

Network for GWHGAAZE026591

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00466.21Ribosomal_L1071082.80E-19
PF17777.2RL10P_insert1352041.30E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02941RP-LP0, RPLP0 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0042254biological_processribosome biogenesis

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf525.149
SRR3591706second leaf248.196
SRR3591707mature leaf124.738
SRR3591708Shoot apex680.443
SRR3591709Stem199.217
SRR3591710White floral bud240.279
SRR3591711White flower315.887
SRR3591712Green floral bud535.679
SRR3591713Yellow flower275.856
SRP173429 SRR8316895Juvenile bud stage 297.976
SRR8316896Juvenile bud stage 435.485
SRR8316897Juvenile bud stage 206.189
SRR8316894Third green stage 163.668
SRR8316900Third green stage 542.398
SRR8316901Third green stage 506.436
SRR8316898Complete white stage 90.554
SRR8316899Complete white stage 367.203
SRR8316903Complete white stage 123.613
SRR8316902Silver flowering stage96.021
SRR8316904Silver flowering stage96.044
SRR8316905Silver flowering stage47.011
SRR8316906Gold flowering stage 187.504
SRR8316907Gold flowering stage 188.691
SRR8316908Gold flowering stage 244.221
SRP132670SRR6706286Control284.085
SRR6706287Light intensity 50%310.928
SRR6706288Light intensity 20%352.388
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1438.873
CNS0095593Slightly white alabastrum(diploid) 2495.807
CNS0095594Slightly white alabastrum(diploid) 3464.966
CNS0095595Whole white alabastrum(diploid) 2370.757
CNS0095596Whole white alabastrum(diploid) 3477.031
CNS0095597Whole white alabastrum(diploid) 4322.281
CNS0095598Silvery flower (diploied) 1145.242
CNS0095599Silvery flower (diploied) 2137.990
CNS0095600Silvery flower (diploied) 3188.685
CNS0095601Golden flower (diploid) 1105.969
CNS0095602Golden flower (diploid) 2174.826
CNS0095603Golden flower (diploid) 3162.755
CNS0095604Slightly white alabastrum(tetraploid) 1504.642
CNS0095605Slightly white alabastrum(tetraploid) 2544.525
CNS0095606Slightly white alabastrum(tetraploid) 3488.096
CNS0095607Whole white alabastrum(tetraploid) 1295.585
CNS0095608Whole white alabastrum(tetraploid) 2220.750
CNS0095609Whole white alabastrum(tetraploid) 3427.509
CNS0095610Silvery flower (tetraploid) 1176.787
CNS0095611Silvery flower (tetraploid) 2145.373
CNS0095612Silvery flower (tetraploid) 3162.691
CNS0095613Golden flower (tetraploid) 1124.853
CNS0095614Golden flower (tetraploid) 2155.969
CNS0095615Golden flower (tetraploid) 3163.954
CRA001975CRR073297Stem 1466.445
CRR073298Stem 2465.461
CRR073299Stem 3582.099
CRR073300Leaf 1459.842
CRR073301Leaf 2510.794
CRR073302Leaf 3658.263
CRR073303Juvenile bud 1441.665
CRR073304Juvenile bud 2381.953
CRR073305Juvenile bud 3400.791
CRR073306Third green 1161.823
CRR073307Third green 2134.497
CRR073308Third green 3140.423
CRR073309Second white 1234.716
CRR073310Second white 2175.658
CRR073311Second white 3138.107
CRR073312Silver flowering 1309.912
CRR073313Silver flowering 2413.141
CRR073314Silver flowering 3284.898
CRR073315Gold flowering 1168.519
CRR073316Gold flowering 2207.305
CRR073317Gold flowering 3183.204
CRR073318Tawny withering 1450.813
CRR073319Tawny withering 2371.793
CRR073320Tawny withering 3466.892