Gene detail

Detail information of GWHGAAZE026580

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002271517.1	PREDICTED: nuclear pore complex protein NUP88 [Vitis vinifera]
Swissprot	tr\|Q9FFK6\|NUP88_ARATH	Nuclear pore complex protein NUP88 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|D7T4Q9\|D7T4Q9_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI25491.3}
TAIR10	AT5G05680.1	nuclear pore complex protein-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	6829156	6841325	+
GWHAAZE00000008	mRNA	6829156	6841325	+
GWHAAZE00000008	exon	6829156	6829458	+
GWHAAZE00000008	exon	6832545	6832696	+
GWHAAZE00000008	exon	6832887	6833009	+
GWHAAZE00000008	exon	6833554	6833698	+
GWHAAZE00000008	exon	6834214	6834275	+
GWHAAZE00000008	exon	6836135	6836351	+
GWHAAZE00000008	exon	6838095	6839021	+
GWHAAZE00000008	exon	6840112	6840361	+
GWHAAZE00000008	exon	6841060	6841325	+
GWHAAZE00000008	CDS	6829156	6829458	+
GWHAAZE00000008	CDS	6832545	6832696	+
GWHAAZE00000008	CDS	6832887	6833009	+
GWHAAZE00000008	CDS	6833554	6833698	+
GWHAAZE00000008	CDS	6834214	6834275	+
GWHAAZE00000008	CDS	6836135	6836351	+
GWHAAZE00000008	CDS	6838095	6839021	+
GWHAAZE00000008	CDS	6840112	6840361	+
GWHAAZE00000008	CDS	6841060	6841325	+

Transcript Sequence
>GWHTAAZE026614 ATGAAATTCAGTTTCGATTTATCCGAACCCATAGACGACAAGCCCTCTTCACCTCTAACACCACCATCACCATCTACACCAAAAGGGGACGACCTTCAATGGCTTCCCCTTCACAACCACCCCGTTTTCTCCTCCTCCGCCCACTCCACTTCCTCCGGCTACCGGCTGCCAACAAATCTCATTGCCTGGGACGGAGCTTCTCGCCTCTACTTTTGGGAAACTAATAAACAATGTCTCCATCGGATCTCTATTCGCTTGGGCGAACCCCACCCTACTTCTGTTATCGCCGCTTCCCCGTCTAAGGTACTGAAAACAGATGTGCAGCTCAGTTTTGTGGTCAATAAAATTTCCATAAACAGAAATGGATCAGCACTACTACTCTCCTCTCCAGATGGTTCATGTGTCATGTACCTCTATGGGCGAAGTTCTGTAAAAGATAATGCCATTATTTGCAGGACTGTCTCAATTGGCTCTGAAATCTACTTCAACGCAAACAATGTCATACGGACATTACAGATTTCATGGCACCCTTACAGCGACACCCATCTGGGAATTCTTTCTTCTGATTCGGTGTTCAGGCTTTTTGATTTGTCTGCTCATCTTCAGCAACTGGAACAGGAATATTATTTACAGCCCATGGAACCAGGTCGATCTAGGAATGCAGCATCAATCTGCCCGGTTGATTTTTCTTTTGGGGGTGACCACTTGTGGGACAGATTTAGTGTTTTTGTTTTATTTACCGATGGTTCGGTTTACATCATATGCCCAGTTGTTCCTTTTGGAAGTGCCTATAAATGGGAATCGATATTGGAAATGTATAATGATGCTCAGACATTTGGACTCAAATCTGCCAGTACAAAAGCAGTTAGCAATTCTAATCTGGCCATATCATGGTTGGAAGCAACATTTCCCGAGTTAGCTCACCAAGTAGTAGAAGGTGGAAATATTTCTGCACTTAGGGCTCAGCCTCACGCATTATTTGATGCATCCCTTCAATTGCAGGGGCCTCTTCGTAAAGTGTGTGACAGTGGCGAAGAATATTCCAAAGTACAAATTGCAGAATGTGGAGGGCGTGCAGTCAGCTTTATATACAATTCAGTAAGCAAAGATTCAATTCTTGTTACTGCGTGGAGCGGTGGGCAATTACAAATAGATGCCCTAGCTGACGAAATACAACCTGTCTGGTCCGTTGGCAGTCCACCTCGTGTTTGTGTCGATTCATATGACCGTATTGTCGGCGTTGCAATGATTTGTGAATCACTTTCCAACGAGCATTCCATAGTGAAGCTTGACAAACCCCCCAACTCTAACGTTTGGTTAGGGTACCCACCACCCTTGTTGCGGTTAGCCATTGTGGATTTAGCCCTACCAAGAAACAACGAAAACGGGTCCCTTGTTTCAATGTTTGTGGACCCACTTATTCCAGAGAGAATATATTCCATTCATGACGGTGGAATTGATTCAATTGTGTTGCATTTTCTTCCTTTTACGAGTCAAACAAGTGGAAAGAGTGAAATTATGAGAACTCCTCCCTCTGTTCATTCTGTTCTTAGTACAATTCAAGGAGACTCATCGCCATCATCTCCTCTTTGTGGGTTTGTGGCATTGTCGGATTCATTTGGGCATTCTTGGATTGTCGGCCTCACTTCCTCGTGTGAATGTATTTTGCTAGAGATGGAAACTTGGAATATGTTGGTTCCTATTCATGTTGATATGGAGAAGAAACTCACAAGCTTGGATGAGCTGAAATCAATTGGTACTACTACCTCCATTATAAGCAAAGAACTTCTTAGTGGCCCTAAGTTGGTTCTTGTGCCTCCTTCCTCGGCAAATCTACGCTCTCTTGCTCCTGATTCTATTGAAGGCCGATCAACTCTTCATCAGTACTTCAAGCTTTTTCATGAGAATTATGTGGAGTATGGACACAAGGTGTTCTTTGAACTCAAGCATCATGGATCTCAGTTGAAGAAAATAATCGACGATCAGCATGCTCGTCTACGAGAGACACAAAAGAAACTTTTGAGGGTGGAAGAGAAACAGGAAAATTTGGAGGGCCGTATTGATCGTGCGGTTCAGCTTCACGGCCTCCTAGAAGAGCGCTTGCAAAGCTTGAGAAACCTGCCTGGGGCCCACAAGAAACCATTGTCCAAAGCAGAGAGAGAGTTCAAAACAGAATTAGACAGATATAGTGGCGTGGAATTGGACGCATTGCACTCCTCGGTTGATGCCTTGAACTCGAGGCTAAAAAGATACATACGTTCTCGGCAGAGCAATACATCGAACCAACAGAGGCAAATATCGGCTAGGAGGAATAATTATACCCGAACCGATGAAATCTCCCTCCTCAAGTCCTCACTGGAGAAACTCTCACTCGTCAACAGCGAGAACACAAAAAAGGTCAGACTCGTGGAATCCGAATTGAGAAACCGTGACCACATCAATTGA

Network for GWHGAAZE026580

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10168.10	Nup88	37	229	2.30E-14
PF10168.10	Nup88	464	767	5.70E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14318	NUP88	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.054
	SRR3591706	second leaf	8.603
	SRR3591707	mature leaf	7.790
	SRR3591708	Shoot apex	14.003
	SRR3591709	Stem	10.196
	SRR3591710	White floral bud	4.742
	SRR3591711	White flower	6.540
	SRR3591712	Green floral bud	10.577
	SRR3591713	Yellow flower	3.690
SRP173429	SRR8316895	Juvenile bud stage	7.180
	SRR8316896	Juvenile bud stage	10.157
	SRR8316897	Juvenile bud stage	3.668
	SRR8316894	Third green stage	4.387
	SRR8316900	Third green stage	11.038
	SRR8316901	Third green stage	10.198
	SRR8316898	Complete white stage	1.433
	SRR8316899	Complete white stage	13.193
	SRR8316903	Complete white stage	4.677
	SRR8316902	Silver flowering stage	3.034
	SRR8316904	Silver flowering stage	4.693
	SRR8316905	Silver flowering stage	2.077
	SRR8316906	Gold flowering stage	8.553
	SRR8316907	Gold flowering stage	7.365
	SRR8316908	Gold flowering stage	7.414
SRP132670	SRR6706286	Control	11.508
	SRR6706287	Light intensity 50%	11.869
	SRR6706288	Light intensity 20%	12.211
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.244
	CNS0095593	Slightly white alabastrum(diploid) 2	5.323
	CNS0095594	Slightly white alabastrum(diploid) 3	6.082
	CNS0095595	Whole white alabastrum(diploid) 2	5.139
	CNS0095596	Whole white alabastrum(diploid) 3	4.123
	CNS0095597	Whole white alabastrum(diploid) 4	4.857
	CNS0095598	Silvery flower (diploied) 1	9.037
	CNS0095599	Silvery flower (diploied) 2	8.705
	CNS0095600	Silvery flower (diploied) 3	13.063
	CNS0095601	Golden flower (diploid) 1	9.807
	CNS0095602	Golden flower (diploid) 2	13.772
	CNS0095603	Golden flower (diploid) 3	11.787
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.198
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.718
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.682
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.971
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.255
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.184
	CNS0095610	Silvery flower (tetraploid) 1	10.577
	CNS0095611	Silvery flower (tetraploid) 2	14.822
	CNS0095612	Silvery flower (tetraploid) 3	4.573
	CNS0095613	Golden flower (tetraploid) 1	2.448
	CNS0095614	Golden flower (tetraploid) 2	8.135
	CNS0095615	Golden flower (tetraploid) 3	3.236
CRA001975	CRR073297	Stem 1	15.713
	CRR073298	Stem 2	13.326
	CRR073299	Stem 3	16.037
	CRR073300	Leaf 1	14.341
	CRR073301	Leaf 2	13.009
	CRR073302	Leaf 3	10.114
	CRR073303	Juvenile bud 1	13.070
	CRR073304	Juvenile bud 2	9.403
	CRR073305	Juvenile bud 3	18.170
	CRR073306	Third green 1	1.327
	CRR073307	Third green 2	0.690
	CRR073308	Third green 3	1.010
	CRR073309	Second white 1	1.651
	CRR073310	Second white 2	2.157
	CRR073311	Second white 3	2.171
	CRR073312	Silver flowering 1	1.826
	CRR073313	Silver flowering 2	1.055
	CRR073314	Silver flowering 3	0.902
	CRR073315	Gold flowering 1	8.979
	CRR073316	Gold flowering 2	13.718
	CRR073317	Gold flowering 3	10.059
	CRR073318	Tawny withering 1	9.996
	CRR073319	Tawny withering 2	5.407
	CRR073320	Tawny withering 3	10.251