Gene detail

Detail information of GWHGAAZE026568

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011076700.1	0	PREDICTED: zinc finger CCCH domain-containing protein 29-like [Sesamum indicum]
Swissprot	tr\|Q9XEE6\|C3H29_ARATH	0	Zinc finger CCCH domain-containing protein 29
trEMBL	tr\|A0A068V011\|A0A068V011_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_78 {ECO:0000313\|EMBL:CDP14011.1}
TAIR10	AT2G40140.2	5E-149	zinc finger (CCCH-type) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	6656339	6658273	-
GWHAAZE00000008	mRNA	6656339	6658273	-
GWHAAZE00000008	exon	6656339	6658273	-
GWHAAZE00000008	CDS	6656339	6658273	-

Transcript Sequence
>GWHTAAZE026602 ATGGAAGGTTTTAAACATGGGTCGAATCTGCTCGAATTTGCAGCCGGTGATGATGTCACCGGCTTCAGATTCGAAGTTGAAGAGGTGGGTTTTGATGTTGATGAGGTGAGCTTGTGGTATGGTAGAAAAATTGGGTCTAAGAAGATGGGGCTTGAAGAAAGAACCCCATTAATGATTGCTTCTAGCTATGGAAGCACTCAGGTTTTGAGGTACATAATTGGAACTGGGAAAGTCGATGTTAATCGAGCTTGTGATTCTGATGGGGTCACCGCCCTCCACTGTGCTGCTGCTGGTGGGTCCAATTCCGCTGTGGACGTTGTCAAGCTCTTGCTTGACGCAGCTGCAAACCCTAATTCGGTTGATTCCAATGGGAACCGGCCCAGTGACTTGATTGCTCCGTTTGTCAAGAACTCGAGCAATTCGATAAAGAGGAAACTGGAGATTCTGTTGAATGGAGGGGAGTTGGATGAAGATGAGGAAAGTGAAGTTCCCATAAAAGAAGTATCGGATAAGAAGGAGTATCCGATTGATGTATCGTTGCCCGATATAAACAATGGGGTTTATGGAAGTGATGAGTTTAGAATGTATAGTTTCAAGGTGAAGCCGTGTTCGAGAGCCTACTCTCATGATTGGACCGAGTGCCCCTTTGTTCACCCCGGTGAGAACGCAAGGAGAAGAGACCCAAGAAAGTATAACTACACTTGTGTGCCTTGCCCGGAGTTTCGCAAGGGAACTTGTGTGAAAGGTGATGCTTGTGAGTATGCACACGGGGTGTTCGAGTCTTGGCTTCACCCAGCCCAGTACAGGACTAGACTATGCAAGGATGAAATTGGTTGTGCAAGAAAAGTATGTTTCTTTGCCCACAAGGTCGAAGAATTGCGACCCTTGTACGCTTCAACTGGCTCGGCTATGCCTTCGCCCAAGTCCCTTTCAGTTAGCTCCATGGACATGGCGACATTGAGTCCATTGGGCGTCGGTTCGACCCCACCAATGTCTCCCTCTGCAGGCAGCTCATCACCCATGTGGCAGAACAAAGTTAGCCTCGCACCGCCCACGCTGCAGCTCCCCGGTAGCCGGCTAAAGTCGGCTGTGAGCGCTAGAGATGTGGAATTGGAGATGGAACTACTTGGACTTGAAAGTATACGCACTCATCAGCAACAAAGGCAGCAATTGATAGATGATTTGTCGGGTCTTTCTTCCCCATGGAACAAAGACTACGCTAGATTTGGTGATTTGAAGCCCACTAATCTTGATAGTGTTTATGGTTCGCTCGATTCTTCGTATTTATCTCAATTGCAGGCTCTCTCCCTATCACCAAAGGTGTCAACGGTGACCACCACCACCACTACTGCGTCCCAGTTGCAATCCCCAACCGGGCACCAAATGCGCCAAAACATGAACCAAAACATGAACCAGTTAAGGGCGAGCTACCCGTCGAACCTATCATCCTCACCGGTTAGGAAGCCGTCTGCATATGGGTTTGACTCATCTGCAGCAGTGGCTGCAGCTGTCATGAACTCAAGGTCCGCTGCTTTTGCCAAGCAGCGAAGCCAGAGCTTTGTTGACAGAGGAGCTGTGAGCAGCCATCGTAATAATGGCTTCACTGCTAGTTCGGGGAACTCGGCCAATTTGATGTCGGATTGGGGTTCGCCTACTGGGAAACTCGAATGGGGTTATAATGGTGATGACCTTGGCAAGCTAAAGAAATCGGTGTCTTTTGGGATTCGAAGTGGCACTGGCAATGGTGCAACCAGAGCTGCACAGGGTCCATCGAGTGGTGAGCCAGACGTGTCTTGGGTTAATTCATTGGTCAAAGATGTTTCGTCGGTTGGGGCTGGGCTATACAGTTCGGAGCAGAATCATGGAAGTGTTCATGAGAAGCTCCCACCGTGGGTTGAGCAGTTTTACATGGAGCAGGAGCAGATGGTGGCATAA

Network for GWHGAAZE026568

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13637.7	Ank_4	53	111	5.70E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	344.640
	SRR3591706	second leaf	183.941
	SRR3591707	mature leaf	73.327
	SRR3591708	Shoot apex	246.063
	SRR3591709	Stem	483.793
	SRR3591710	White floral bud	338.889
	SRR3591711	White flower	389.096
	SRR3591712	Green floral bud	180.108
	SRR3591713	Yellow flower	164.505
SRP173429	SRR8316895	Juvenile bud stage	281.169
	SRR8316896	Juvenile bud stage	137.395
	SRR8316897	Juvenile bud stage	145.266
	SRR8316894	Third green stage	84.002
	SRR8316900	Third green stage	126.000
	SRR8316901	Third green stage	186.551
	SRR8316898	Complete white stage	33.989
	SRR8316899	Complete white stage	608.136
	SRR8316903	Complete white stage	58.161
	SRR8316902	Silver flowering stage	46.430
	SRR8316904	Silver flowering stage	50.906
	SRR8316905	Silver flowering stage	26.038
	SRR8316906	Gold flowering stage	109.663
	SRR8316907	Gold flowering stage	99.531
	SRR8316908	Gold flowering stage	109.399
SRP132670	SRR6706286	Control	62.395
	SRR6706287	Light intensity 50%	83.883
	SRR6706288	Light intensity 20%	70.978
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	140.725
	CNS0095593	Slightly white alabastrum(diploid) 2	211.098
	CNS0095594	Slightly white alabastrum(diploid) 3	183.575
	CNS0095595	Whole white alabastrum(diploid) 2	142.751
	CNS0095596	Whole white alabastrum(diploid) 3	28.867
	CNS0095597	Whole white alabastrum(diploid) 4	144.973
	CNS0095598	Silvery flower (diploied) 1	561.766
	CNS0095599	Silvery flower (diploied) 2	548.631
	CNS0095600	Silvery flower (diploied) 3	336.723
	CNS0095601	Golden flower (diploid) 1	654.685
	CNS0095602	Golden flower (diploid) 2	480.924
	CNS0095603	Golden flower (diploid) 3	461.389
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.251
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.863
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.386
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.716
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.809
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.681
	CNS0095610	Silvery flower (tetraploid) 1	82.621
	CNS0095611	Silvery flower (tetraploid) 2	49.370
	CNS0095612	Silvery flower (tetraploid) 3	139.259
	CNS0095613	Golden flower (tetraploid) 1	42.870
	CNS0095614	Golden flower (tetraploid) 2	51.807
	CNS0095615	Golden flower (tetraploid) 3	66.604
CRA001975	CRR073297	Stem 1	206.420
	CRR073298	Stem 2	264.717
	CRR073299	Stem 3	335.544
	CRR073300	Leaf 1	468.348
	CRR073301	Leaf 2	564.219
	CRR073302	Leaf 3	300.062
	CRR073303	Juvenile bud 1	340.365
	CRR073304	Juvenile bud 2	419.922
	CRR073305	Juvenile bud 3	704.093
	CRR073306	Third green 1	189.959
	CRR073307	Third green 2	220.123
	CRR073308	Third green 3	236.059
	CRR073309	Second white 1	110.943
	CRR073310	Second white 2	160.144
	CRR073311	Second white 3	166.797
	CRR073312	Silver flowering 1	340.507
	CRR073313	Silver flowering 2	267.701
	CRR073314	Silver flowering 3	258.442
	CRR073315	Gold flowering 1	457.201
	CRR073316	Gold flowering 2	757.013
	CRR073317	Gold flowering 3	644.630
	CRR073318	Tawny withering 1	405.671
	CRR073319	Tawny withering 2	941.295
	CRR073320	Tawny withering 3	636.265