Gene detail

Detail information of GWHGAAZE026567

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002528298.1	6.4331E-142	tryptophan biosynthesis protein, putative [Ricinus communis]
COG	YP_004671388.1	2E-37	N-(5'-phosphoribosyl)anthranilate isomerase
Swissprot	tr\|Q42440\|PAI1_ARATH	2E-118	N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic (Precursor)
trEMBL	tr\|B9SQM9\|B9SQM9_RICCO	2E-142	Tryptophan biosynthesis protein, putative {ECO:0000313\|EMBL:EEF34056.1}
TAIR10	AT1G07780.5	9E-89	phosphoribosylanthranilate isomerase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	6642856	6646291	-
GWHAAZE00000008	mRNA	6642856	6646291	-
GWHAAZE00000008	exon	6645950	6646291	-
GWHAAZE00000008	exon	6645651	6645713	-
GWHAAZE00000008	exon	6644266	6644630	-
GWHAAZE00000008	exon	6643868	6644031	-
GWHAAZE00000008	exon	6642856	6643081	-
GWHAAZE00000008	five_prime_UTR	6645960	6646291	-
GWHAAZE00000008	CDS	6645950	6645959	-
GWHAAZE00000008	CDS	6645651	6645713	-
GWHAAZE00000008	CDS	6644266	6644630	-
GWHAAZE00000008	CDS	6643868	6644031	-
GWHAAZE00000008	CDS	6642856	6643081	-

Transcript Sequence
>GWHTAAZE026601 TCTTCAATCTCTGCAGTCTGCTCTCTTTGTAGTTTCTCCCTCGTTTCCCTTTCTTATTCTTTATAATTTCGTTGTTCTTATTCTCTAGTTAAAATAAAAAATAAAATAAATCTGAGAAGCAAATCCTTTCCCAACTTCGATTCATTTCTAGGCATAACATCCTGCGCGCTTCTTATTTCCTTTTTCTTTTTATTTTTCTACTTAATTCATAGTGCATGTATGTCTGTGTAATAGCTTTATATTCACGAATTCCAACTTTTTCATCATTCTTCTGATATTTCTCACTCTCTTCTCTAGTGCAGGAATTTCAAATCCATTAAAGAAAGGAAAAGATGCTCAAAGGGATAAATGTGGGAAGTCAATTCCAACCCAAAGCACTAAACATGCACACAAGGCAAATCTTTGGTATCCAGGACAGCGAAATGCATTTTTCAAGGATAAGGATATTAAGAAAGAAAACAAGAATAAATATGTTACATCAATCAACAGAGCTATCCCCTACTCCTAAGGAACATGAAGAAAGTAGGCCATTAGTTAAAATGTGCGGAATTACATCAGCTCAAGATGCGGCTCTGGCAGCAGAAGCTGGTGCGAATTTTATCGGTATGATTCTCTGGCCCAATTCAAAGCGTTCAATTTCATTTGAAGTTGCAAAAGAAATCTCAAAAGTTGCACGAGAATATGGGGCAAAACCTGTTGGGGTGTTTGTTGATGATAATGCTGAGACGATATTAAGGGCATCTGATGCTGCTGACCTCGAATTTGTGCAGCTTCATGGAGATGGTTCTCGGGAAGCTTTTCCAAATTTGGTGAGAGAAAACCGAATAATATATGTCCTTCATTCTAATAAAGATGGAGACCTTTTGAACCAAATATCTGATGAAGAGTGCTCATTAGTCGATTGGATACTCGTGGATAGTGCAACTGGGGGGAGTGGTAAAGGATTTAACTGGTCTCAGTTTAAGCTACCGCCAATCAGGAGCAAACATGGATGGCTCTTGGCTGGAGGGATCAACCCAGAGAATGTATGTGAAGCTCTTTCTACTCTAAAGCCACATGGAATTGATGTCAGTAGTGGCATTTGCGCTTCAGATGGCATTCGAAAGGATGAGTTGCGGATATCATCCTTCATGAGTGCAGTGAACTCTGTAAGTTATTGA

Network for GWHGAAZE026567

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00697.23	PRAI	68	268	1.00E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01817	trpF	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0006568	biological_process	tryptophan metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004640	molecular_function	phosphoribosylanthranilate isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.405
	SRR3591706	second leaf	3.757
	SRR3591707	mature leaf	3.631
	SRR3591708	Shoot apex	9.959
	SRR3591709	Stem	8.765
	SRR3591710	White floral bud	3.983
	SRR3591711	White flower	3.773
	SRR3591712	Green floral bud	5.636
	SRR3591713	Yellow flower	5.357
SRP173429	SRR8316895	Juvenile bud stage	5.332
	SRR8316896	Juvenile bud stage	11.176
	SRR8316897	Juvenile bud stage	5.621
	SRR8316894	Third green stage	3.790
	SRR8316900	Third green stage	9.405
	SRR8316901	Third green stage	8.824
	SRR8316898	Complete white stage	1.681
	SRR8316899	Complete white stage	6.630
	SRR8316903	Complete white stage	2.224
	SRR8316902	Silver flowering stage	1.856
	SRR8316904	Silver flowering stage	2.466
	SRR8316905	Silver flowering stage	1.294
	SRR8316906	Gold flowering stage	4.093
	SRR8316907	Gold flowering stage	4.075
	SRR8316908	Gold flowering stage	3.385
SRP132670	SRR6706286	Control	6.838
	SRR6706287	Light intensity 50%	7.333
	SRR6706288	Light intensity 20%	9.150
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.833
	CNS0095593	Slightly white alabastrum(diploid) 2	11.440
	CNS0095594	Slightly white alabastrum(diploid) 3	9.864
	CNS0095595	Whole white alabastrum(diploid) 2	9.915
	CNS0095596	Whole white alabastrum(diploid) 3	9.425
	CNS0095597	Whole white alabastrum(diploid) 4	6.755
	CNS0095598	Silvery flower (diploied) 1	3.133
	CNS0095599	Silvery flower (diploied) 2	1.508
	CNS0095600	Silvery flower (diploied) 3	2.767
	CNS0095601	Golden flower (diploid) 1	3.718
	CNS0095602	Golden flower (diploid) 2	2.749
	CNS0095603	Golden flower (diploid) 3	2.988
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.525
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.981
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.472
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.938
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.370
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.738
	CNS0095610	Silvery flower (tetraploid) 1	6.605
	CNS0095611	Silvery flower (tetraploid) 2	6.519
	CNS0095612	Silvery flower (tetraploid) 3	6.545
	CNS0095613	Golden flower (tetraploid) 1	3.913
	CNS0095614	Golden flower (tetraploid) 2	4.611
	CNS0095615	Golden flower (tetraploid) 3	0.920
CRA001975	CRR073297	Stem 1	6.277
	CRR073298	Stem 2	4.749
	CRR073299	Stem 3	3.114
	CRR073300	Leaf 1	6.539
	CRR073301	Leaf 2	4.901
	CRR073302	Leaf 3	5.107
	CRR073303	Juvenile bud 1	5.783
	CRR073304	Juvenile bud 2	5.168
	CRR073305	Juvenile bud 3	3.499
	CRR073306	Third green 1	1.605
	CRR073307	Third green 2	0.969
	CRR073308	Third green 3	1.562
	CRR073309	Second white 1	0.866
	CRR073310	Second white 2	1.561
	CRR073311	Second white 3	1.239
	CRR073312	Silver flowering 1	1.254
	CRR073313	Silver flowering 2	1.200
	CRR073314	Silver flowering 3	0.563
	CRR073315	Gold flowering 1	6.984
	CRR073316	Gold flowering 2	4.973
	CRR073317	Gold flowering 3	1.702
	CRR073318	Tawny withering 1	4.000
	CRR073319	Tawny withering 2	9.410
	CRR073320	Tawny withering 3	5.457