Detail information of GWHGAAZE026556


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP13994.10unnamed protein product [Coffea canephora]
Swissprottr|Q0WNJ6|CLAH1_ARATH0Clathrin heavy chain 1
trEMBLtr|I1MZ13|I1MZ13_SOYBN0Clathrin heavy chain {ECO:0000256|PIRNR:PIRNR002290}
TAIR10AT3G11130.10Clathrin, heavy chain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene64506866465364-
GWHAAZE00000008mRNA64506866465364-
GWHAAZE00000008exon64653206465364-
GWHAAZE00000008exon64645456464749-
GWHAAZE00000008exon64637386463826-
GWHAAZE00000008exon64635506463628-
GWHAAZE00000008exon64633346463461-
GWHAAZE00000008exon64615886461686-
GWHAAZE00000008exon64613886461496-
GWHAAZE00000008exon64609576461036-
GWHAAZE00000008exon64606476460874-
GWHAAZE00000008exon64597536459869-
GWHAAZE00000008exon64592226459272-
GWHAAZE00000008exon64581986458395-
GWHAAZE00000008exon64579666458082-
GWHAAZE00000008exon64577806457839-
GWHAAZE00000008exon64574786457564-
GWHAAZE00000008exon64571416457224-
GWHAAZE00000008exon64569146457048-
GWHAAZE00000008exon64567666456828-
GWHAAZE00000008exon64565806456684-
GWHAAZE00000008exon64563686456480-
GWHAAZE00000008exon64560276456279-
GWHAAZE00000008exon64558086455944-
GWHAAZE00000008exon64554506455728-
GWHAAZE00000008exon64543576455359-
GWHAAZE00000008exon64532716453756-
GWHAAZE00000008exon64525206452690-
GWHAAZE00000008exon64522536452438-
GWHAAZE00000008exon64514506451572-
GWHAAZE00000008exon64511386451248-
GWHAAZE00000008exon64506866450862-
GWHAAZE00000008CDS64653206465364-
GWHAAZE00000008CDS64645456464749-
GWHAAZE00000008CDS64637386463826-
GWHAAZE00000008CDS64635506463628-
GWHAAZE00000008CDS64633346463461-
GWHAAZE00000008CDS64615886461686-
GWHAAZE00000008CDS64613886461496-
GWHAAZE00000008CDS64609576461036-
GWHAAZE00000008CDS64606476460874-
GWHAAZE00000008CDS64597536459869-
GWHAAZE00000008CDS64592226459272-
GWHAAZE00000008CDS64581986458395-
GWHAAZE00000008CDS64579666458082-
GWHAAZE00000008CDS64577806457839-
GWHAAZE00000008CDS64574786457564-
GWHAAZE00000008CDS64571416457224-
GWHAAZE00000008CDS64569146457048-
GWHAAZE00000008CDS64567666456828-
GWHAAZE00000008CDS64565806456684-
GWHAAZE00000008CDS64563686456480-
GWHAAZE00000008CDS64560276456279-
GWHAAZE00000008CDS64558086455944-
GWHAAZE00000008CDS64554506455728-
GWHAAZE00000008CDS64543576455359-
GWHAAZE00000008CDS64532716453756-
GWHAAZE00000008CDS64525206452690-
GWHAAZE00000008CDS64522536452438-
GWHAAZE00000008CDS64514506451572-
GWHAAZE00000008CDS64511386451248-
GWHAAZE00000008CDS64506866450862-
Transcript Sequence

Network for GWHGAAZE026556

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01394.21Clathrin_propel20561.80E-07
PF01394.21Clathrin_propel1541972.70E-10
PF13838.7Clathrin_H_link3553944.00E-12
PF00637.21Clathrin5526853.50E-21
PF00637.21Clathrin6968352.10E-21
PF00637.21Clathrin8459785.50E-28
PF00637.21Clathrin98811251.80E-31
PF00637.21Clathrin114212767.40E-26
PF00637.21Clathrin128414261.40E-28
PF00637.21Clathrin143515743.50E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04646CLTC Endocytosis map04144
Lysosomemap04142
Endocrine and other factor-regulated calcium reabsorptionmap04961
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport
GO:0016192biological_processvesicle-mediated transport
GO:0071439cellular_componentclathrin complex
GO:0030130cellular_componentclathrin coat of trans-Golgi network vesicle
GO:0030132cellular_componentclathrin coat of coated pit
GO:0005515molecular_functionprotein binding
GO:0032051molecular_functionclathrin light chain binding
GO:0005198molecular_functionstructural molecule activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf130.633
SRR3591706second leaf57.282
SRR3591707mature leaf38.377
SRR3591708Shoot apex60.952
SRR3591709Stem73.683
SRR3591710White floral bud76.691
SRR3591711White flower66.956
SRR3591712Green floral bud109.269
SRR3591713Yellow flower49.794
SRP173429 SRR8316895Juvenile bud stage 40.668
SRR8316896Juvenile bud stage 55.302
SRR8316897Juvenile bud stage 29.467
SRR8316894Third green stage 29.903
SRR8316900Third green stage 79.272
SRR8316901Third green stage 71.519
SRR8316898Complete white stage 18.222
SRR8316899Complete white stage 57.138
SRR8316903Complete white stage 49.973
SRR8316902Silver flowering stage23.257
SRR8316904Silver flowering stage37.214
SRR8316905Silver flowering stage15.225
SRR8316906Gold flowering stage 50.159
SRR8316907Gold flowering stage 50.078
SRR8316908Gold flowering stage 52.439
SRP132670SRR6706286Control70.472
SRR6706287Light intensity 50%81.042
SRR6706288Light intensity 20%87.789
CNP0000432CNS0095592Slightly white alabastrum(diploid) 133.083
CNS0095593Slightly white alabastrum(diploid) 234.469
CNS0095594Slightly white alabastrum(diploid) 329.574
CNS0095595Whole white alabastrum(diploid) 236.092
CNS0095596Whole white alabastrum(diploid) 338.764
CNS0095597Whole white alabastrum(diploid) 441.673
CNS0095598Silvery flower (diploied) 126.851
CNS0095599Silvery flower (diploied) 226.686
CNS0095600Silvery flower (diploied) 367.835
CNS0095601Golden flower (diploid) 118.498
CNS0095602Golden flower (diploid) 263.776
CNS0095603Golden flower (diploid) 362.334
CNS0095604Slightly white alabastrum(tetraploid) 150.149
CNS0095605Slightly white alabastrum(tetraploid) 238.237
CNS0095606Slightly white alabastrum(tetraploid) 3103.322
CNS0095607Whole white alabastrum(tetraploid) 149.235
CNS0095608Whole white alabastrum(tetraploid) 254.381
CNS0095609Whole white alabastrum(tetraploid) 391.574
CNS0095610Silvery flower (tetraploid) 154.022
CNS0095611Silvery flower (tetraploid) 246.811
CNS0095612Silvery flower (tetraploid) 354.035
CNS0095613Golden flower (tetraploid) 122.167
CNS0095614Golden flower (tetraploid) 243.623
CNS0095615Golden flower (tetraploid) 355.050
CRA001975CRR073297Stem 178.392
CRR073298Stem 272.780
CRR073299Stem 363.649
CRR073300Leaf 194.678
CRR073301Leaf 276.494
CRR073302Leaf 368.512
CRR073303Juvenile bud 188.930
CRR073304Juvenile bud 263.876
CRR073305Juvenile bud 3102.454
CRR073306Third green 146.388
CRR073307Third green 234.622
CRR073308Third green 349.577
CRR073309Second white 136.520
CRR073310Second white 241.815
CRR073311Second white 353.478
CRR073312Silver flowering 157.387
CRR073313Silver flowering 269.276
CRR073314Silver flowering 356.337
CRR073315Gold flowering 121.591
CRR073316Gold flowering 242.669
CRR073317Gold flowering 326.522
CRR073318Tawny withering 174.061
CRR073319Tawny withering 252.038
CRR073320Tawny withering 378.806