Gene detail

Detail information of GWHGAAZE026545

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006355643.1	4.3218E-144	PREDICTED: ferritin-2, chloroplastic [Solanum tuberosum]
COG	YP_002465080.1	3E-19	ferroxidase
Swissprot	tr\|Q8H1T3\|FRI2_TOBAC	9E-143	Ferritin-2, chloroplastic (Precursor)
trEMBL	tr\|M1CL13\|M1CL13_SOLTU	2E-144	Ferritin {ECO:0000256\|RuleBase:RU361145}
TAIR10	AT2G40300.1	8E-88	ferritin 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	6298741	6301493	+
GWHAAZE00000008	mRNA	6298741	6301493	+
GWHAAZE00000008	exon	6298741	6299112	+
GWHAAZE00000008	exon	6299498	6299581	+
GWHAAZE00000008	exon	6299684	6299744	+
GWHAAZE00000008	exon	6299865	6299952	+
GWHAAZE00000008	exon	6300574	6300635	+
GWHAAZE00000008	exon	6300877	6300942	+
GWHAAZE00000008	exon	6301079	6301142	+
GWHAAZE00000008	exon	6301444	6301493	+
GWHAAZE00000008	five_prime_UTR	6298741	6298810	+
GWHAAZE00000008	CDS	6298811	6299112	+
GWHAAZE00000008	CDS	6299498	6299581	+
GWHAAZE00000008	CDS	6299684	6299744	+
GWHAAZE00000008	CDS	6299865	6299952	+
GWHAAZE00000008	CDS	6300574	6300635	+
GWHAAZE00000008	CDS	6300877	6300942	+
GWHAAZE00000008	CDS	6301079	6301142	+
GWHAAZE00000008	CDS	6301444	6301493	+

Transcript Sequence
>GWHTAAZE026579 AAAACAAACTGCTCTCATTTCTCCTATTTTCTGTCTCTCTAATCATATCTGCAAAACCCTAGCCATAGCCATGCTTCTCAGAGCTTCACCGGCTTTCCCTGTGTTGAGTTCCCATGGCGAGAATCTGAGCCATTTGTTCTCCTCTGCTTCTTCATTAAGCTTTTCTTACAGGAATTCGACGGAGAGAGTCGGAAATGCGGTGGTTGTTTGTTCGGCGAAGCATTCCAACAGTAAGCCGGTCACCGGAGTTCTGTTCGAGCCGTTCGAGGAGGTGAAGAAGGAACTCATGCTAGTTCCTAATTTTCCTCAGGATTCTCTTGCTCGCCAGAAGTATACCGATGAGTGCGAAGCCGCTATCAATGAACAGATCAATGTGGAGTACAATGTTTCATACGTATATCATGCTTTATATGCCTATTTCGATCGGGACAATATTGCTCTCAGGGGTTTAGCCAAGTTTTTCAAGGAATCGAGTGTAGAGGAAAGAGATCATGCTGAGAAATTCATGGAGTATCAGAACAAAAGAGGTGGGAAAGTTAAGCTTCAATGTATTCTGATGCCCCAATCTGATTTTGACCATGCTGAAAAGGGAGACGCATTGTTTGCCATGGAGCTTGTGTTGTCTTTGGAGAAGTTGACAAATGAGAAGCTCCTAAACCTGCACGAGGTAGCCAGTCGTAACAATGATGTACAGTTGGCTGATTTTGTAGAAAGCGAGTTTTTGACTGAGCAGGTGGAAGCAATTAAGAAGATCTCTGAATATGTCGCTCAGCTGAGAAGAGTGGGCAAGGGACATGGTGTTTGGCATTTTGACCAGATGCTCCTTGAGGAGGGAGTTGCTGCATGA

Network for GWHGAAZE026545

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00210.25	Ferritin	94	238	4.00E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00522	FTH1	Ferroptosis	map04216
		Necroptosis	map04217
		Mineral absorption	map04978

Gene Ontology

GO term	Ontology	Name
GO:0006879	biological_process	cellular iron ion homeostasis
GO:0008199	molecular_function	ferric iron binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	618.480
	SRR3591706	second leaf	646.164
	SRR3591707	mature leaf	584.865
	SRR3591708	Shoot apex	282.548
	SRR3591709	Stem	391.500
	SRR3591710	White floral bud	435.144
	SRR3591711	White flower	439.869
	SRR3591712	Green floral bud	177.496
	SRR3591713	Yellow flower	199.311
SRP173429	SRR8316895	Juvenile bud stage	128.377
	SRR8316896	Juvenile bud stage	186.033
	SRR8316897	Juvenile bud stage	102.959
	SRR8316894	Third green stage	69.171
	SRR8316900	Third green stage	196.449
	SRR8316901	Third green stage	176.231
	SRR8316898	Complete white stage	414.267
	SRR8316899	Complete white stage	310.190
	SRR8316903	Complete white stage	705.052
	SRR8316902	Silver flowering stage	411.641
	SRR8316904	Silver flowering stage	767.551
	SRR8316905	Silver flowering stage	276.222
	SRR8316906	Gold flowering stage	837.042
	SRR8316907	Gold flowering stage	831.490
	SRR8316908	Gold flowering stage	1109.023
SRP132670	SRR6706286	Control	97.459
	SRR6706287	Light intensity 50%	145.843
	SRR6706288	Light intensity 20%	127.766
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	137.008
	CNS0095593	Slightly white alabastrum(diploid) 2	140.949
	CNS0095594	Slightly white alabastrum(diploid) 3	126.254
	CNS0095595	Whole white alabastrum(diploid) 2	146.730
	CNS0095596	Whole white alabastrum(diploid) 3	104.732
	CNS0095597	Whole white alabastrum(diploid) 4	73.816
	CNS0095598	Silvery flower (diploied) 1	375.876
	CNS0095599	Silvery flower (diploied) 2	571.230
	CNS0095600	Silvery flower (diploied) 3	924.436
	CNS0095601	Golden flower (diploid) 1	293.223
	CNS0095602	Golden flower (diploid) 2	620.406
	CNS0095603	Golden flower (diploid) 3	619.924
	CNS0095604	Slightly white alabastrum(tetraploid) 1	121.486
	CNS0095605	Slightly white alabastrum(tetraploid) 2	120.590
	CNS0095606	Slightly white alabastrum(tetraploid) 3	174.027
	CNS0095607	Whole white alabastrum(tetraploid) 1	54.344
	CNS0095608	Whole white alabastrum(tetraploid) 2	58.415
	CNS0095609	Whole white alabastrum(tetraploid) 3	69.969
	CNS0095610	Silvery flower (tetraploid) 1	473.727
	CNS0095611	Silvery flower (tetraploid) 2	551.521
	CNS0095612	Silvery flower (tetraploid) 3	373.390
	CNS0095613	Golden flower (tetraploid) 1	266.026
	CNS0095614	Golden flower (tetraploid) 2	322.847
	CNS0095615	Golden flower (tetraploid) 3	97.800
CRA001975	CRR073297	Stem 1	188.968
	CRR073298	Stem 2	162.922
	CRR073299	Stem 3	181.176
	CRR073300	Leaf 1	229.305
	CRR073301	Leaf 2	226.660
	CRR073302	Leaf 3	257.618
	CRR073303	Juvenile bud 1	250.574
	CRR073304	Juvenile bud 2	342.844
	CRR073305	Juvenile bud 3	228.010
	CRR073306	Third green 1	336.023
	CRR073307	Third green 2	241.858
	CRR073308	Third green 3	317.732
	CRR073309	Second white 1	329.292
	CRR073310	Second white 2	262.934
	CRR073311	Second white 3	360.093
	CRR073312	Silver flowering 1	226.876
	CRR073313	Silver flowering 2	204.312
	CRR073314	Silver flowering 3	195.588
	CRR073315	Gold flowering 1	472.210
	CRR073316	Gold flowering 2	577.456
	CRR073317	Gold flowering 3	302.380
	CRR073318	Tawny withering 1	141.602
	CRR073319	Tawny withering 2	129.413
	CRR073320	Tawny withering 3	183.214