Gene detail

Detail information of GWHGAAZE026543

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011035874.1	0	PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase-like isoform X1 [Populus euphratica]
COG	YP_659712.1	3E-32	glycoside hydrolase
trEMBL	tr\|F6HCA6\|F6HCA6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49830.1}
TAIR10	AT3G11040.1	0	Glycosyl hydrolase family 85

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	6261140	6267297	+
GWHAAZE00000008	mRNA	6261140	6267297	+
GWHAAZE00000008	exon	6261140	6261494	+
GWHAAZE00000008	exon	6261651	6261929	+
GWHAAZE00000008	exon	6262680	6262817	+
GWHAAZE00000008	exon	6263038	6263147	+
GWHAAZE00000008	exon	6263238	6263349	+
GWHAAZE00000008	exon	6263439	6263546	+
GWHAAZE00000008	exon	6264835	6264947	+
GWHAAZE00000008	exon	6265113	6265194	+
GWHAAZE00000008	exon	6265520	6265600	+
GWHAAZE00000008	exon	6265736	6265791	+
GWHAAZE00000008	exon	6265952	6266087	+
GWHAAZE00000008	exon	6266602	6267297	+
GWHAAZE00000008	five_prime_UTR	6261140	6261494	+
GWHAAZE00000008	five_prime_UTR	6261651	6261761	+
GWHAAZE00000008	CDS	6261762	6261929	+
GWHAAZE00000008	CDS	6262680	6262817	+
GWHAAZE00000008	CDS	6263038	6263147	+
GWHAAZE00000008	CDS	6263238	6263349	+
GWHAAZE00000008	CDS	6263439	6263546	+
GWHAAZE00000008	CDS	6264835	6264947	+
GWHAAZE00000008	CDS	6265113	6265194	+
GWHAAZE00000008	CDS	6265520	6265600	+
GWHAAZE00000008	CDS	6265736	6265791	+
GWHAAZE00000008	CDS	6265952	6266087	+
GWHAAZE00000008	CDS	6266602	6267297	+

Transcript Sequence
>GWHTAAZE026577 CACGGCCAAAAATGGCGAAGAAAGAATCTAAGGGATGAATTGCCATAGTATAATACGTCAATCTCACACTTTAGTCCTCGTCTAAGTCTTGGGACTTTAAATCTAAATTTCACCATACATCCACAACTTTTTCATCAAATGTTTATTCTCTTCCAATCATTTATAAGTCGCCAAACCCTTATCTCCATCAAAAACCTCATCACTTCAATCAACAATATTCTCTTCTCCCCCTTCTTCATGACTGACGCCGAAATCACCGATCAATCTTCCTCCGATCCACCGCAACGTTCGATCCAAAGCAGCCGGCGGTGCCGATTTCTTATCCGATTAAAACTCTAGAGGAGCTCGAATCGAGGTCGTACTTTGATTCGTTTCATTTTCCGTTCAATAAGTCTTCGGTTAAAATTCGAAGAGTGATGATGATGATGAGTTGCCTAATCGGCCGAGGATTTTGGTGTGCCATGATATGGAGGGAGGGTATACGGATGATAAGTGGGTTCAAGGTGGGAGTAATGCGGATGCGTACGGGATTTGGCATTGGTACTTGATTGATGTGTTTGTGTATTTCTCGCATAGTTTGGTTGCTCTGCCTCCTCCGTGCTGGACTAATACTGCTCATAAGCATGGAGTCAAGGTATTGGGAACTTTCATTACTGAGTGGGACAAAGGTACAGTAATTGCAAACAAGCTGCTCTCAACAAAAGAGTCTGCTCACATGTATGCTGAGCGTTTGACCGAACTTGCTGTTGCTTTGGGCTTTGATGGCTGGCTGATCAATATGGAGGTTCAATTGGACGTTAGAAAAATTCCCAATTTGAAAGAATTTGTCAGTCATTTAACCCAGACGATGCACTCTGCAGTGCCTGGATCTTTAGTCATATGGTATGATAGTATTACCATTGATGGTAATCTTAGCTGGCAAAATCAACTGAATTCCAATAATAAGCCTTTCTTTGATATATGTGACGGCATATTTGTAAACTATTCTTGGCAGGAAGATTATGCTAAGCGCTCCGCTTCTGTTGCTGGTAGCAGAAAGTTTGATGTCTACATGGGTATTGATGTATTTGGAAGGGGAACCTTCGGTGGTGGGCAATGGACTACAAATGTTGCACTTGATGTAATAAAGAAAGATGATGTGTCAGCTGCCATATTTGCTCCAGGATGGGTCTACGAGACCAAGCAACCTCCTAATTTCCAGACTGCTCAAAATCGATGGTGGGGACTTGTTGAGAAGTCATGGAACATATCACAAAATTATCCCAGAGAACTTCCATTCTACTCAAATTTTGATCAGGGCCACGGCTACCATGTTTCCATTGACGGAGGGACAATATCAGATTCTCCTTGGAACAATCTTTCTTCCCAAACCTTTCAGCCTCTCCTCAAGTTTTCTGGAGATCCTAACCTGGACCCTGTTCAAGTTTCGGTTGATTTTAAGGAAGCATCATATAACGGAGGAGGGAACATCACGTTTAAAGGAACTCTTGAAGACAATGCTTATTTCACCACAAGGCTCTTTCAGGGAGAGCTTCTTTTGGGGAATTTACCGATCCACTTTACATATTCAGTAAAATCAGATGGGAGCTCAATGGTGGGCCTTTCCCTTCAATTCTCTTCTCTCACAAACAAGAAAACATCTGTACTTTTGGCATCCTACGGAAATACCTTAATTACCCTTAACCGCTTCTCGAGCAAATTCAGTAACGTAATAATGCCCCAGCGAGCCACCGAGTTGGAAACCGCGCCAGGATGGGTCATACAAGAGAGTAGCATTGCAATGAATGGGTACACATTAACAGAAATTCACGCCGTATGCTATAAGTCAACTCTTGAAGTCAACCCTTCAGCTCGTGGTCCATCAGAATACCATGCTGTTCTTGGCCACATAACAATTAAAACTCCCTTACAAAAGTCGGATTTTCCACCATCTACTTCATGGCTAGTTGAAAGTCAATACATCAATTGGACTTCAGGTTCCCAGGGTTCTAAGACCCTAAGCATCAAAATATTATGGTCCTTGAATGACGGAAGCGTCCCCATATTTTCAAAGTACAATATTTATGTGGAGAAACAGAGTGGAGGGCTTAATGGGAAGCCCGTGTATCTCGGGGTGGCGAATGTGAGAGCCTTTTACATTTCTGAGCTTTCGGTTCCTTCGGGTACTTCAAGTCTTAAGTTTGTTATTCAAGTTTGCGGACTTGACGGTGTTTGCCAAAAGCTAGATGATTCTCCGGTTTATCAGGTGCCGGTCAAAGGTGCGTAA

Network for GWHGAAZE026543

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03644.14	Glyco_hydro_85	5	282	3.00E-94

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01227	ENGASE	Other glycan degradation	map00511

Gene Ontology

GO term	Ontology	Name
GO:0005737	cellular_component	cytoplasm
GO:0033925	molecular_function	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.659
	SRR3591706	second leaf	49.346
	SRR3591707	mature leaf	62.909
	SRR3591708	Shoot apex	17.959
	SRR3591709	Stem	53.305
	SRR3591710	White floral bud	72.399
	SRR3591711	White flower	25.256
	SRR3591712	Green floral bud	55.507
	SRR3591713	Yellow flower	6.075
SRP173429	SRR8316895	Juvenile bud stage	21.201
	SRR8316896	Juvenile bud stage	25.115
	SRR8316897	Juvenile bud stage	14.018
	SRR8316894	Third green stage	13.294
	SRR8316900	Third green stage	51.037
	SRR8316901	Third green stage	39.767
	SRR8316898	Complete white stage	48.207
	SRR8316899	Complete white stage	46.467
	SRR8316903	Complete white stage	92.587
	SRR8316902	Silver flowering stage	12.411
	SRR8316904	Silver flowering stage	22.253
	SRR8316905	Silver flowering stage	11.307
	SRR8316906	Gold flowering stage	18.424
	SRR8316907	Gold flowering stage	17.857
	SRR8316908	Gold flowering stage	23.133
SRP132670	SRR6706286	Control	40.695
	SRR6706287	Light intensity 50%	42.538
	SRR6706288	Light intensity 20%	42.788
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.164
	CNS0095593	Slightly white alabastrum(diploid) 2	29.968
	CNS0095594	Slightly white alabastrum(diploid) 3	24.151
	CNS0095595	Whole white alabastrum(diploid) 2	18.344
	CNS0095596	Whole white alabastrum(diploid) 3	14.840
	CNS0095597	Whole white alabastrum(diploid) 4	20.815
	CNS0095598	Silvery flower (diploied) 1	10.864
	CNS0095599	Silvery flower (diploied) 2	15.180
	CNS0095600	Silvery flower (diploied) 3	39.094
	CNS0095601	Golden flower (diploid) 1	10.447
	CNS0095602	Golden flower (diploid) 2	16.259
	CNS0095603	Golden flower (diploid) 3	18.326
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.521
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.901
	CNS0095606	Slightly white alabastrum(tetraploid) 3	63.656
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.352
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.926
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.257
	CNS0095610	Silvery flower (tetraploid) 1	37.548
	CNS0095611	Silvery flower (tetraploid) 2	19.857
	CNS0095612	Silvery flower (tetraploid) 3	43.411
	CNS0095613	Golden flower (tetraploid) 1	12.016
	CNS0095614	Golden flower (tetraploid) 2	19.331
	CNS0095615	Golden flower (tetraploid) 3	8.035
CRA001975	CRR073297	Stem 1	31.317
	CRR073298	Stem 2	24.379
	CRR073299	Stem 3	22.469
	CRR073300	Leaf 1	30.629
	CRR073301	Leaf 2	26.918
	CRR073302	Leaf 3	24.621
	CRR073303	Juvenile bud 1	44.323
	CRR073304	Juvenile bud 2	92.054
	CRR073305	Juvenile bud 3	41.662
	CRR073306	Third green 1	56.708
	CRR073307	Third green 2	80.183
	CRR073308	Third green 3	56.006
	CRR073309	Second white 1	23.059
	CRR073310	Second white 2	21.044
	CRR073311	Second white 3	11.814
	CRR073312	Silver flowering 1	4.559
	CRR073313	Silver flowering 2	3.753
	CRR073314	Silver flowering 3	2.692
	CRR073315	Gold flowering 1	29.912
	CRR073316	Gold flowering 2	46.949
	CRR073317	Gold flowering 3	34.015
	CRR073318	Tawny withering 1	53.659
	CRR073319	Tawny withering 2	88.465
	CRR073320	Tawny withering 3	53.356