Gene detail

Detail information of GWHGAAZE026538

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004240884.1	0	PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Solanum lycopersicum]
COG	YP_270079.1	9E-24	Snf2 family protein
Swissprot	tr\|F4K493\|CLSY2_ARATH	0	SNF2 domain-containing protein CLASSY 2
trEMBL	tr\|K4C5J5\|K4C5J5_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g050510.2.1}
TAIR10	AT3G42670.1	0	chromatin remodeling 38

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	6216212	6221647	+
GWHAAZE00000008	mRNA	6216212	6221647	+
GWHAAZE00000008	exon	6216212	6216230	+
GWHAAZE00000008	exon	6216307	6216557	+
GWHAAZE00000008	exon	6216844	6218244	+
GWHAAZE00000008	exon	6218844	6218906	+
GWHAAZE00000008	exon	6218994	6219134	+
GWHAAZE00000008	exon	6219710	6221647	+
GWHAAZE00000008	CDS	6216212	6216230	+
GWHAAZE00000008	CDS	6216307	6216557	+
GWHAAZE00000008	CDS	6216844	6218244	+
GWHAAZE00000008	CDS	6218844	6218906	+
GWHAAZE00000008	CDS	6218994	6219134	+
GWHAAZE00000008	CDS	6219710	6221647	+

Transcript Sequence
>GWHTAAZE026572 ATGGTTGGTATGGAAAACTCTTTTGAGGCATTTCATCATGGCTCATGGCACCCTGTGGATCGCTTAAGAATAAAAGATGGGGCTATAAGGATGCTTGTTAAAAATAAGGAAAAAGTGACTGAAGAGAACATTCCAATCTCACATCTTCGAATAATGTCAAGAAAAGCATCCTTATCGGATTGCACCTGCATTTTAAGACCCGGGATGGATGTTTCTGTGTTTTCACCCTCTCAGAATACTGAAAATTCAGACACTAAAAATAAAGAGCCTGTATGGACTGATGCTAAAATAAGTTCTATTGAGAGGAAGCCTCATGAAAATGAATGTTCATGTGAATTCTATGTTAGTTTCTACGTGACCCAAGGCCCTGCTGGTTTCACAAAGAAAAAAATTTATAAAGAGGTCATCAATGTGAAAATTAATCAAATTTCCATCCTTCAAAAGCTTGAACGAAATCCTTGTGAGAATACACACTACCGTTGGAGTTCTTCTGAGGACTGCCCTTCACGGAATACATTTAAATTATTTACGGGAAAATTCTCAACTGACCTTTCATGGCTAGTTGTTGCATCTGTTTTCCAGCAACTTGTTTTTGATGTAAGGTCAATACAGAACCAGATTGTCTACCAGATTTGGGACAGTGACGATCATAAAGGCCCCACCAATTCTGAAAGACAATCAAACGGTGTGAATTTCAAGGTAGAAAATGGAATCTCAATTCCCATCCTCGTCTCTTTTATTCCCAGGGAAAATCTTGAGGTGGAAAAGGATTCTGACTTGCGTGATGATGGGCCAATGTCATTGTACGATCAAATGGGCTTGCGGCGTTCAAAACGTCGAAATGTTCAGCCGGAGCGGTACTTGGGCTGTGATGATTTGCCTTACGCGGAAGTTGATTTGTCGCGAATAGGGTTATACAGGCCCCAGAAATTTGAGTACGAGGAAATGCCAATGGCACTGTCTATCCAGGACGATCATGCGTATAAAAATGATACCTATGTTGATAATGGAGAAAGAATCAATTATAATGCAAAAGAATTTCACGATAGTTTTAATTCCTGGCGGAGTAAAATTAAGCCGATGGAGAAAAAACCTGTTGTAGATGACGAGGGAGATCATCAATCGGAACTTGCTATTGTTCCTCTCTTTGACCCAACGGAAAACAATTCCAGAGTCCATGAAAAAGATCTTGATGCCGAGATTCCTCAAGATCATAAAGTAGAGATTGGAGAAATACTTTCCAAGTGTGTACGCTTAAATGGTTCTCTATCAGTACATAGAAAGAAAGCTTCTGAAGTTGAATTTTTGGAAGCAGAAAGTGGATGGGAGGGGAAAGGATGGCGTAATAAACAACGAAAAAGGAGGGATTCTCGTAGTTCTTCTTTAGTAAGGGAGAGTGTTTACGATTTTAGATTTGTTGCAAAGAGATCCTTGAGTGCGAGCGTGTACAGGGAAATGATAAGAAGGTGCATGCAGAACATAGAAGTTTCAGTCAATAAAGAACAGCCGCTAGTTATTGATCAGTGGAAAGAGTTTCGGGCCACAAATTTCTTGGACCAAGGCGATAATGACGTACCGTTGAAGGAAAATGAAGACGAGAACTCAGAAACTGAAATGCTGTGGAAGGAAATGGAATTCGCAATGGCATCAACCTATATTCTTGAAGATGAGGTCATGCAATGGAGCACCCTAAATATTGAAAACTGGTTCCCAAGAACAGGCAAAAGTGAACTTGACCCTGCTGAAGTGGAAAACCCAAATAAAATCAGTGGACCAGTTTGTCGACATGACTACCGACTCAATGAAGAGATTGGAATTGTGTGCCTAATATGTGGCTTTGTGTGCACCGAAATAAAAGATGTCATGCCATCCTTTTTGCCATCCACAAACTTAATCACAAACAGAGAACCATGCACGGAAGATGATCCAGAGGAAAAGGTAGATGAAGATGGGGGCCTTGATCTCTTCTGCATTCCCACCGCATCAAACACGCCCTTAACAGAAAATAAGGACAATGTGTGGGCCCTAATACCTGAGCTTAAAGAAAAGTTGCGGTTCCACCAAAAAAGAGCGTTTGAATTTCTATGGCGAAATATTGCTGGATCTATGATACCTCGCCATATGGAACAAGAACGTGAGAAACGAGGTGGTTGTGTTATATCTCATTCACCTGGAGCTGGGAAAACACTACTCATTATCACGTTCCTTGTGAGCTACTTGAAGTTATTCCCTGGATCACGGCCCTTAGTTCTTGCTCCAAAGACAACACTTTATACTTGGTACAAAGAAATCATTAAGTGGGATATCCCTATCCCGGTTTATCAAATCCATGGTGGGCAAACATACCGAGGTGAAGTCTCGAGGCAAAAGGCAAAATTAGGGCCGGGGGTTCCTTGTAATCAAGACGTGATGCATGTTTTGGATTGCTTAGAAAAGATACAGAAGTGGCTTGCTCAACCAAGCGTTCTTCTCATGGGTTATACCTCGTTTCTAATATTAACCAGAGAAGATTCTAAATACGCTCACAGGCAATACATGGGCAAAGTTTTGCGGGAATGTCCTGGGATTTTGATACTTGACGAAGGGCACAACCCAAGAAGCACCAAATCGAGGTTAAGGAAAGCTTTAATGAAAGTTGACACCCCACTGAGGGTTTTGCTCTCGGGAACGCTTTTCCAAAACAATTTTGGTGAATATTTCAACACCCTTTGCTTAGCAAGACCGCGCTTTGTCAACGAGGTGTTGATGGAGCTAGACCCCAAGTACAGGAGGAGAAAAAAGGGCTCGAAAACGCGTTTTTCATTGGAAAATCGAGCTAGAAAATTATTCATCTATCAAATTGCGGGGAAGATTGATTCTAGCATACCGAAGGAAAGATTGCAGGCTCTTAATACCTTGAAGAATTTGACGAGCGGATTTATAGACGTCCACGAAGGTGGAACCTCCGATAGCCTTCCTGGTTTACAATGCTACACTTTGTTGATGAAGTCTACCACTGTCCAACAAGAGATTCTCGATAAACTTCAGAATCAAAGGCCTCTATACAAAGGGTTTCCACTCGAGTTAGAGCTTTTGATCACCCTCGGATCTATACATCCTTGGTTGATTCGAACTACAATGTCTGCTAACCAATACTTCAGCCCTGAAGAGTTGGAGAGCCTCGAGGGATCAAAGTTCGACTTGAAACTAGGCTCAAAAATTAGATTCGTTATGAGCCTCGTTCCTCGGTGTTTACTAAGGAGAGAGAAGGTGCTCATATTTTGCCATAACATCGCTCCGATTAATCTATTCTTGGAGATATTCGAGATGTTTTACGGGTGGAAAAAGGGCGAGGAGGTGCTCGTTCTTCAAGGAGACCTCGAGCTCTTTGAACGAGGGAGAGTTATGGACAAGTTTGAGGAACCGGGGGGTGCATCGAAGGTAATGCTAGCCTCCATTACGGCTTGTGCTGAGGGCATTAGTTTGACCGCAGCATCGCGTGTGATTTTGTTGGATTCGGAGTGGAACCCTTCAAAGAGCAAGCAGGCTATTGCAAGGGCTTTTCGGCCTGGGCAAGACAAGGTTGTGTATGTGTATCAGCTTTTGGCTACAGGCACACTCGAGGAGGAGAAATACCGGAGAACTACTTGGAAAGAGTGGGTTTCGAGCCTTATTTTCAGTGAGGAACATGTGGAGGACCCTTGTCACTGGCAAGCTCCAAAGATTGAGGATGAACTGTTGAGGGAGATTGTGGAGGAGGATAGAGCTACATTGTTCCATATGATCATGAAGAATGAGAAGGCCTCAAATGGGTTGGTCAGAGGTAAGGAATAA

Network for GWHGAAZE026538

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.24	SNF2_N	688	913	1.20E-16
PF00271.32	Helicase_C	1072	1183	1.40E-12

Protein Sequence

>GWHPAAZE026556
MVGMENSFEAFHHGSWHPVDRLRIKDGAIRMLVKNKEKVTEENIPISHLRIMSRKASLSDCTCILRPGMDVSVFSPSQNTENSDTKNKEPVWTDAKISSIERKPHENECSCEFYVSFYVTQGPAGFTKKKIYKEVINVKINQISILQKLERNPCENTHYRWSSSEDCPSRNTFKLFTGKFSTDLSWLVVASVFQQLVFDVRSIQNQIVYQIWDSDDHKGPTNSERQSNGVNFKVENGISIPILVSFIPRENLEVEKDSDLRDDGPMSLYDQMGLRRSKRRNVQPERYLGCDDLPYAEVDLSRIGLYRPQKFEYEEMPMALSIQDDHAYKNDTYVDNGERINYNAKEFHDSFNSWRSKIKPMEKKPVVDDEGDHQSELAIVPLFDPTENNSRVHEKDLDAEIPQDHKVEIGEILSKCVRLNGSLSVHRKKASEVEFLEAESGWEGKGWRNKQRKRRDSRSSSLVRESVYDFRFVAKRSLSASVYREMIRRCMQNIEVSVNKEQPLVIDQWKEFRATNFLDQGDNDVPLKENEDENSETEMLWKEMEFAMASTYILEDEVMQWSTLNIENWFPRTGKSELDPAEVENPNKISGPVCRHDYRLNEEIGIVCLICGFVCTEIKDVMPSFLPSTNLITNREPCTEDDPEEKVDEDGGLDLFCIPTASNTPLTENKDNVWALIPELKEKLRFHQKRAFEFLWRNIAGSMIPRHMEQEREKRGGCVISHSPGAGKTLLIITFLVSYLKLFPGSRPLVLAPKTTLYTWYKEIIKWDIPIPVYQIHGGQTYRGEVSRQKAKLGPGVPCNQDVMHVLDCLEKIQKWLAQPSVLLMGYTSFLILTREDSKYAHRQYMGKVLRECPGILILDEGHNPRSTKSRLRKALMKVDTPLRVLLSGTLFQNNFGEYFNTLCLARPRFVNEVLMELDPKYRRRKKGSKTRFSLENRARKLFIYQIAGKIDSSIPKERLQALNTLKNLTSGFIDVHEGGTSDSLPGLQCYTLLMKSTTVQQEILDKLQNQRPLYKGFPLELELLITLGSIHPWLIRTTMSANQYFSPEELESLEGSKFDLKLGSKIRFVMSLVPRCLLRREKVLIFCHNIAPINLFLEIFEMFYGWKKGEEVLVLQGDLELFERGRVMDKFEEPGGASKVMLASITACAEGISLTAASRVILLDSEWNPSKSKQAIARAFRPGQDKVVYVYQLLATGTLEEEKYRRTTWKEWVSSLIFSEEHVEDPCHWQAPKIEDELLREIVEEDRATLFHMIMKNEKASNGLVRGKE

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
K10875	RAD54L, RAD54	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.791
	SRR3591706	second leaf	11.530
	SRR3591707	mature leaf	12.751
	SRR3591708	Shoot apex	16.370
	SRR3591709	Stem	17.482
	SRR3591710	White floral bud	7.254
	SRR3591711	White flower	9.612
	SRR3591712	Green floral bud	15.328
	SRR3591713	Yellow flower	4.597
SRP173429	SRR8316895	Juvenile bud stage	11.038
	SRR8316896	Juvenile bud stage	12.950
	SRR8316897	Juvenile bud stage	5.899
	SRR8316894	Third green stage	4.335
	SRR8316900	Third green stage	11.610
	SRR8316901	Third green stage	10.002
	SRR8316898	Complete white stage	1.500
	SRR8316899	Complete white stage	15.602
	SRR8316903	Complete white stage	2.897
	SRR8316902	Silver flowering stage	2.013
	SRR8316904	Silver flowering stage	2.692
	SRR8316905	Silver flowering stage	1.406
	SRR8316906	Gold flowering stage	6.904
	SRR8316907	Gold flowering stage	6.089
	SRR8316908	Gold flowering stage	7.237
SRP132670	SRR6706286	Control	8.453
	SRR6706287	Light intensity 50%	9.052
	SRR6706288	Light intensity 20%	9.066
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.705
	CNS0095593	Slightly white alabastrum(diploid) 2	6.193
	CNS0095594	Slightly white alabastrum(diploid) 3	7.155
	CNS0095595	Whole white alabastrum(diploid) 2	6.103
	CNS0095596	Whole white alabastrum(diploid) 3	4.953
	CNS0095597	Whole white alabastrum(diploid) 4	5.394
	CNS0095598	Silvery flower (diploied) 1	12.666
	CNS0095599	Silvery flower (diploied) 2	8.697
	CNS0095600	Silvery flower (diploied) 3	10.978
	CNS0095601	Golden flower (diploid) 1	9.282
	CNS0095602	Golden flower (diploid) 2	12.389
	CNS0095603	Golden flower (diploid) 3	12.040
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.733
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.126
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.010
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.040
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.389
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.729
	CNS0095610	Silvery flower (tetraploid) 1	8.665
	CNS0095611	Silvery flower (tetraploid) 2	10.320
	CNS0095612	Silvery flower (tetraploid) 3	4.858
	CNS0095613	Golden flower (tetraploid) 1	3.398
	CNS0095614	Golden flower (tetraploid) 2	6.753
	CNS0095615	Golden flower (tetraploid) 3	2.310
CRA001975	CRR073297	Stem 1	11.772
	CRR073298	Stem 2	9.677
	CRR073299	Stem 3	9.205
	CRR073300	Leaf 1	10.139
	CRR073301	Leaf 2	8.227
	CRR073302	Leaf 3	7.224
	CRR073303	Juvenile bud 1	7.457
	CRR073304	Juvenile bud 2	4.291
	CRR073305	Juvenile bud 3	11.210
	CRR073306	Third green 1	0.439
	CRR073307	Third green 2	0.293
	CRR073308	Third green 3	0.897
	CRR073309	Second white 1	1.183
	CRR073310	Second white 2	1.470
	CRR073311	Second white 3	1.387
	CRR073312	Silver flowering 1	0.922
	CRR073313	Silver flowering 2	0.715
	CRR073314	Silver flowering 3	0.703
	CRR073315	Gold flowering 1	5.795
	CRR073316	Gold flowering 2	9.856
	CRR073317	Gold flowering 3	5.803
	CRR073318	Tawny withering 1	6.204
	CRR073319	Tawny withering 2	5.873
	CRR073320	Tawny withering 3	6.927