Gene detail

Detail information of GWHGAAZE026536

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADJ67432.1	1.0003E-112	ethylene response factor 3 [Actinidia deliciosa]
Swissprot	tr\|Q8LFR2\|DRE2C_ARATH	5E-71	Dehydration-responsive element-binding protein 2C
trEMBL	tr\|D8VD30\|D8VD30_ACTDE	4E-113	Ethylene response factor 3 {ECO:0000313\|EMBL:ADJ67432.1}
TAIR10	AT2G40340.1	1E-35	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	6189476	6190486	+
GWHAAZE00000008	mRNA	6189476	6190486	+
GWHAAZE00000008	exon	6189476	6190486	+
GWHAAZE00000008	CDS	6189476	6190486	+

Transcript Sequence
>GWHTAAZE026570 ATGGGTCATCTTCATCAAACATCTCAGACGGATTCTGTACCAAATGATAACTCTAGGAAGAGGAAATCACGAGGCAGACGGGTCAAAAATGTAGCCGAAACACTTGCTAAGTGGAAAGAGTACAACAGCAAGCTTGTTTCCGTTGATAATGGCACCAAACCAGCTCGTAAAATCCCTGCCAAAGGATCTAAGAAAGGATGTATGAAGGGTAAAGGAGGCCCCGACAACTCAAATTGCAAATACAGAGGTGTTAGGCAGAGAACTTGGGGTAAATGGGTTGCAGAAATTCGGGAACCCAACAGGGGTAGTAGACTCTGGTTAGGTACCTTTGGAACTGCTCCTGAAGCTGCTTTAGCTTACGACGAAGCTGCAAGGGCCATGTATGGCCCTGGTGCCCGCCTTAATTTCCCAGATTCGGGCCATTTGAATGAATCTTCTTTTGGGCCGACTACGTCCAGTGCTGATTCAACAACAACTTCAACCCATTCAGAGGAGTCGAAAGTGAAGTTCAATTCTCCGAAGATTAAACACGATGATGGGGAAGGTGAATCGAGAATAGATGGCAATTGGCCTTTAGCAGTATATGAAGCTAACACGCCATTGCCTGCGCTGAAGAAGGAAGTGAAAGAAGAGCCTTTAAATTTCAATGAAGCGCTTGGTCTTAACTTGGATCAAGATTATTTTCGGAACTTCTCGTTTGATGAAATGTTTGACGTAGATGAGCTTCTTGGGGTTTTGGACAGCAATCCCCCTGGAGAGTCCAAGTTCAAGAATGAGCTGGGCGACAATATGGAGTACCAAAATCAAAATCCTCCAGATTTATCGTACCAGTTACAGAACCCAGATGCCAAATTGCTTGGAAGTTTACATCATATGGAGCGGGCACCCTCAGATGTTGATTATAGCTTTGATTTTTTGAAGCCGGGGAGGCAGGAGGATTATAGTTTTACACTGGATGACTTGGCGTTTCTTGATCCGGACTCAAATTTGGGGGCTCAATATGCACCCTAA

Network for GWHGAAZE026536

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	79	129	1.10E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	69.886
	SRR3591706	second leaf	6.544
	SRR3591707	mature leaf	3.836
	SRR3591708	Shoot apex	25.781
	SRR3591709	Stem	50.306
	SRR3591710	White floral bud	51.184
	SRR3591711	White flower	67.789
	SRR3591712	Green floral bud	50.357
	SRR3591713	Yellow flower	42.604
SRP173429	SRR8316895	Juvenile bud stage	41.679
	SRR8316896	Juvenile bud stage	50.372
	SRR8316897	Juvenile bud stage	23.978
	SRR8316894	Third green stage	7.966
	SRR8316900	Third green stage	14.638
	SRR8316901	Third green stage	28.207
	SRR8316898	Complete white stage	4.444
	SRR8316899	Complete white stage	68.127
	SRR8316903	Complete white stage	4.569
	SRR8316902	Silver flowering stage	8.338
	SRR8316904	Silver flowering stage	7.958
	SRR8316905	Silver flowering stage	4.710
	SRR8316906	Gold flowering stage	19.521
	SRR8316907	Gold flowering stage	14.631
	SRR8316908	Gold flowering stage	13.122
SRP132670	SRR6706286	Control	2.290
	SRR6706287	Light intensity 50%	2.890
	SRR6706288	Light intensity 20%	3.287
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.731
	CNS0095593	Slightly white alabastrum(diploid) 2	27.106
	CNS0095594	Slightly white alabastrum(diploid) 3	27.808
	CNS0095595	Whole white alabastrum(diploid) 2	20.567
	CNS0095596	Whole white alabastrum(diploid) 3	6.013
	CNS0095597	Whole white alabastrum(diploid) 4	21.827
	CNS0095598	Silvery flower (diploied) 1	74.727
	CNS0095599	Silvery flower (diploied) 2	64.471
	CNS0095600	Silvery flower (diploied) 3	28.972
	CNS0095601	Golden flower (diploid) 1	76.876
	CNS0095602	Golden flower (diploid) 2	47.122
	CNS0095603	Golden flower (diploid) 3	45.611
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.844
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.349
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.446
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.719
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.070
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.397
	CNS0095610	Silvery flower (tetraploid) 1	13.269
	CNS0095611	Silvery flower (tetraploid) 2	14.413
	CNS0095612	Silvery flower (tetraploid) 3	42.114
	CNS0095613	Golden flower (tetraploid) 1	12.293
	CNS0095614	Golden flower (tetraploid) 2	12.848
	CNS0095615	Golden flower (tetraploid) 3	11.764
CRA001975	CRR073297	Stem 1	24.414
	CRR073298	Stem 2	47.628
	CRR073299	Stem 3	44.306
	CRR073300	Leaf 1	76.504
	CRR073301	Leaf 2	116.418
	CRR073302	Leaf 3	50.729
	CRR073303	Juvenile bud 1	48.267
	CRR073304	Juvenile bud 2	60.492
	CRR073305	Juvenile bud 3	107.792
	CRR073306	Third green 1	21.079
	CRR073307	Third green 2	23.921
	CRR073308	Third green 3	19.459
	CRR073309	Second white 1	16.657
	CRR073310	Second white 2	22.985
	CRR073311	Second white 3	14.861
	CRR073312	Silver flowering 1	54.707
	CRR073313	Silver flowering 2	51.676
	CRR073314	Silver flowering 3	36.664
	CRR073315	Gold flowering 1	22.434
	CRR073316	Gold flowering 2	18.590
	CRR073317	Gold flowering 3	20.611
	CRR073318	Tawny withering 1	14.315
	CRR073319	Tawny withering 2	38.970
	CRR073320	Tawny withering 3	25.119