Gene detail

Detail information of GWHGAAZE026482

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011076582.1	PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X2 [Sesamum indicum]
trEMBL	tr\|A0A022PWF1\|A0A022PWF1_ERYGU	Uncharacterized protein {ECO:0000313\|EMBL:EYU20126.1}
TAIR10	AT2G40730.1	Protein kinase family protein with ARM repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	5341241	5358268	+
GWHAAZE00000008	mRNA	5341241	5358268	+
GWHAAZE00000008	exon	5341241	5341276	+
GWHAAZE00000008	exon	5344241	5344339	+
GWHAAZE00000008	exon	5348111	5348262	+
GWHAAZE00000008	exon	5348577	5348649	+
GWHAAZE00000008	exon	5348774	5348896	+
GWHAAZE00000008	exon	5349226	5349334	+
GWHAAZE00000008	exon	5349891	5349970	+
GWHAAZE00000008	exon	5350189	5350270	+
GWHAAZE00000008	exon	5352909	5353048	+
GWHAAZE00000008	exon	5353130	5353240	+
GWHAAZE00000008	exon	5353383	5353499	+
GWHAAZE00000008	exon	5353630	5353719	+
GWHAAZE00000008	exon	5355103	5355156	+
GWHAAZE00000008	exon	5355826	5355901	+
GWHAAZE00000008	exon	5356043	5356142	+
GWHAAZE00000008	exon	5356628	5356697	+
GWHAAZE00000008	exon	5357823	5357899	+
GWHAAZE00000008	exon	5358112	5358268	+
GWHAAZE00000008	CDS	5341241	5341276	+
GWHAAZE00000008	CDS	5344241	5344339	+
GWHAAZE00000008	CDS	5348111	5348262	+
GWHAAZE00000008	CDS	5348577	5348649	+
GWHAAZE00000008	CDS	5348774	5348896	+
GWHAAZE00000008	CDS	5349226	5349334	+
GWHAAZE00000008	CDS	5349891	5349970	+
GWHAAZE00000008	CDS	5350189	5350270	+
GWHAAZE00000008	CDS	5352909	5353048	+
GWHAAZE00000008	CDS	5353130	5353240	+
GWHAAZE00000008	CDS	5353383	5353499	+
GWHAAZE00000008	CDS	5353630	5353719	+
GWHAAZE00000008	CDS	5355103	5355156	+
GWHAAZE00000008	CDS	5355826	5355901	+
GWHAAZE00000008	CDS	5356043	5356142	+
GWHAAZE00000008	CDS	5356628	5356697	+
GWHAAZE00000008	CDS	5357823	5357899	+
GWHAAZE00000008	CDS	5358112	5358268	+

Transcript Sequence
>GWHTAAZE026516 ATGATGCTGAAGGTTTTAACTCTGAAAAAATCTGAGGAAGATGGATCTCCAGTGTCGATATTTTCTCTTTCAGGAAGTACTGCCACTGATGGACATTTAGTTGCCGGTCGCAATGGCGTCAAGCGTCTCCGCACGGTCAGGCATCCAAATATTCTATCATTCCTTCATAGTACAGAGGCTGAAACTTCTGATGGCTCATCTTCGAAGGTTACTATCTATATTGTCACCGAACCTGTTATGCCACTGTCAGAGAAGATCAAGGAATTAGGATTAGAAGGTACACAAAGAGATGAGTATTATGCGTGGGGATTGCATCGGATAGCTAAAGCCGTGAGCTTCCTAAATAATGATTGTAAACTAGTGCATGGTAATGTTTGTCTGGAAAGTGTTGTCGTTACGCAGACATTGGACTGGAAACTACATGCTTTTGATGTTCTATCAGAGTTTGATGGTAGTAATGAAGCTTCTACAGGACCAATGCTGCAATATCAATGGCTTGTTGGTTCACAATACAAAGCAATGGAGTTGGTTAAGTCTGACTGGGCAACAATCAGGAAATCTCCACCTTGGGCTATTGATTCTTGGGGTTTGGGCTGTCTTATTTATGAGCTTTTCTCTGGTACAAAGCTGAGCAAAACAGAAGAACTACGTAATACGGCTTCCATACCAAAGTCTCTACTTCCAGATTATCAGCGACTTTTGAGTTCAATGCCTTCTCGCAGGTTGAATTCATCAAAGCTTGTTGAAGATTGTGAATATTTCCAAAACAAATTGGTGGATACCATACATTTCATGGAAATTCTCAATCTGAAGGACAGTGTTGAGAAGGATACATTCTTCCGTAAGCTCCCAAATCTAGCAGAGCAGCTTCCTCGCCCAATTGCGCAGAAAAAGCTAATTCCTTTACTAGCATCTGCCTTGGAATTTGGCTCTGCTGCTGCCCCTGCTTTGACTGCATTATTAAAAATGGGTGCTTGGCTTTCACCTGAAGAATTTAACGTTAAGATACTACCAACAATTGTCAAACTTTTTGCCTCCAATGACCGGGCTATTCGAGTTGGTCTCCTGCAGCATATTGACCAATATGGGGAGTCATTCTCAGCCCAAACTGTTGACGAGCAAGTTTACCCTCATGTTGCTACTGGATTTTCTGATACATCTGCTTTTCTCCGAGAACTGACACTGAAATCCATGCTTGTTTTGGCTCCTAAGCTTTCTCAACGCACTATATCAGGATCATTATTGAAGTATCTCTCAAAGCTGCAGACAAGGAAAAGAGTCCTAATAAATGCATTTACTGTCCGGGCTTTGCGTGATACATTCTCACCCGCCCGAGGAGCAGGTATTATGGCACTATGTGCCACCAGTTCTTATTATGACATAACTGAGATTGCAACCCGGATTTTGCCAAATATTGTTGTACTTACCATCGATCCTGACAGTGATGTTCGATCAAAGGCCTTCCAAGCGGTCGATCAATTTCTGCAAATAGCAAAGCAATACTATGAGAAGACAAATGCTGCTGGGGATACGACAGATGGGTCTTCAATCATAGGAATTTCGATGCCTGGAAATGCAAGTCTACTCGGATGGGCAATGAGCTCCTTGACTCTCAAAGGCGGGAAGCCTTCTGAACAAGCTTCTCATGCTCCATCCAATTCAAGTGCACCTCTCACTTCTGCAGTCTCCAGTACCAGCTCAGGCAAGCATGTTCTCACTTCTGGGGCAAAAACTTTTTTATCATAA

Network for GWHGAAZE026482

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	39	220	1.40E-09

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	SCY1_SCYL1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.098
	SRR3591706	second leaf	19.988
	SRR3591707	mature leaf	13.523
	SRR3591708	Shoot apex	24.880
	SRR3591709	Stem	29.581
	SRR3591710	White floral bud	29.660
	SRR3591711	White flower	28.252
	SRR3591712	Green floral bud	28.296
	SRR3591713	Yellow flower	23.526
SRP173429	SRR8316895	Juvenile bud stage	16.600
	SRR8316896	Juvenile bud stage	23.171
	SRR8316897	Juvenile bud stage	13.073
	SRR8316894	Third green stage	11.064
	SRR8316900	Third green stage	28.189
	SRR8316901	Third green stage	25.866
	SRR8316898	Complete white stage	8.776
	SRR8316899	Complete white stage	28.571
	SRR8316903	Complete white stage	23.649
	SRR8316902	Silver flowering stage	10.028
	SRR8316904	Silver flowering stage	18.831
	SRR8316905	Silver flowering stage	8.105
	SRR8316906	Gold flowering stage	25.043
	SRR8316907	Gold flowering stage	22.331
	SRR8316908	Gold flowering stage	25.215
SRP132670	SRR6706286	Control	22.864
	SRR6706287	Light intensity 50%	22.438
	SRR6706288	Light intensity 20%	25.559
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.095
	CNS0095593	Slightly white alabastrum(diploid) 2	11.961
	CNS0095594	Slightly white alabastrum(diploid) 3	11.074
	CNS0095595	Whole white alabastrum(diploid) 2	13.079
	CNS0095596	Whole white alabastrum(diploid) 3	8.803
	CNS0095597	Whole white alabastrum(diploid) 4	13.422
	CNS0095598	Silvery flower (diploied) 1	14.420
	CNS0095599	Silvery flower (diploied) 2	12.412
	CNS0095600	Silvery flower (diploied) 3	30.634
	CNS0095601	Golden flower (diploid) 1	12.276
	CNS0095602	Golden flower (diploid) 2	28.290
	CNS0095603	Golden flower (diploid) 3	26.027
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.767
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.577
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.165
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.408
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.887
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.011
	CNS0095610	Silvery flower (tetraploid) 1	32.286
	CNS0095611	Silvery flower (tetraploid) 2	31.720
	CNS0095612	Silvery flower (tetraploid) 3	32.537
	CNS0095613	Golden flower (tetraploid) 1	14.025
	CNS0095614	Golden flower (tetraploid) 2	24.496
	CNS0095615	Golden flower (tetraploid) 3	27.013
CRA001975	CRR073297	Stem 1	29.717
	CRR073298	Stem 2	28.901
	CRR073299	Stem 3	25.256
	CRR073300	Leaf 1	35.584
	CRR073301	Leaf 2	30.578
	CRR073302	Leaf 3	27.723
	CRR073303	Juvenile bud 1	29.768
	CRR073304	Juvenile bud 2	25.701
	CRR073305	Juvenile bud 3	33.788
	CRR073306	Third green 1	17.286
	CRR073307	Third green 2	15.963
	CRR073308	Third green 3	20.046
	CRR073309	Second white 1	16.179
	CRR073310	Second white 2	21.651
	CRR073311	Second white 3	24.408
	CRR073312	Silver flowering 1	20.520
	CRR073313	Silver flowering 2	17.562
	CRR073314	Silver flowering 3	19.390
	CRR073315	Gold flowering 1	11.683
	CRR073316	Gold flowering 2	21.807
	CRR073317	Gold flowering 3	14.468
	CRR073318	Tawny withering 1	25.173
	CRR073319	Tawny withering 2	20.530
	CRR073320	Tawny withering 3	28.967