Gene detail

Detail information of GWHGAAZE026481

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAG35659.1AF204926_1	2.13215E-96	transcription factor WRKY5 [Petroselinum crispum]
Swissprot	tr\|Q9SHB5\|WRK55_ARATH	4E-64	WRKY transcription factor 55
trEMBL	tr\|Q9FR28\|Q9FR28_PETCR	8E-97	Transcription factor WRKY5 {ECO:0000313\|EMBL:AAG35659.1}
TAIR10	AT2G40740.1	1E-49	WRKY DNA-binding protein 55

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	5316883	5321007	-
GWHAAZE00000008	mRNA	5316883	5321007	-
GWHAAZE00000008	exon	5320750	5321007	-
GWHAAZE00000008	exon	5320592	5320650	-
GWHAAZE00000008	exon	5319225	5319356	-
GWHAAZE00000008	exon	5316883	5317399	-
GWHAAZE00000008	CDS	5320750	5321007	-
GWHAAZE00000008	CDS	5320592	5320650	-
GWHAAZE00000008	CDS	5319225	5319356	-
GWHAAZE00000008	CDS	5316883	5317399	-

Transcript Sequence
>GWHTAAZE026515 ATGGAGGAGATAATCTCTTTGATCTTCCAAGGGTGTAAACTAGCCAAAGACCTTGAATCAAACCTACCCAACATAGCTAACCAACCCAACATTCTCTCTACTTCATTTGATGAGATTATTAGGGTTTTCTCTGGTGCGAGGGACCGGCTAAACACGCATAACGCTACAATTGCATCATATGGCGATCAAGAGACAACCCAACTAATTGGTGGAGTGGAGGAATGGCTAAGGTATAGTGCCACTCAACCAATGGATATACCGCCAGATGTGGCAGATTCCGGCAGGGGAACTTCGTCCTTGCAAAGAACGAGAAGAAGAAAGGATGGCACTGAGAAAAGGATACTAAAGGTACCTGCACCTCGGATTGGAAATACAGAAATTCCACCTGAAGACGGCTATACTTGGAGAAAATATGGCCAGAAGGAGATTCTTGGGTCCAGATTTCCCAGGGGATATTACAGATGCACCCACCAAAAACTGTACCAATGCCCTGCTAAGAAACAAGTGCAACGTCTCGACGACGATCCTTACACGTTCGAAGTAATATACAGAGATGATCACACGTGCACCATGTCATCCACGGCCCCCTCCACCACTCCTCCGGTGGTCAGACAAGAATCCGCCAACACCAGCCACCCTCTGCAGCCTGCTTCAGTCTCCCTAAGCCACTGGCTGTCCATGGATATTAGGTCATCTGGGGAATCCCCTAGAACTACTTCCTCATTCATTGGCATGCAAATGTATCAACCGGAATTCAGTCAAATTAGCAGTGGAGGCATGATCGGCGGTGGCACTAGTGGTGGCGGTGGTGGCACTGGTAGGGTTGGGAGAGATGACTATTATCAACCAGTTGTGGATTTGGCTGATGTTATGTTTAATACCGGGAGTAGCAGCAATAATAGCATGGACATAATATTTTCTTCTCCTATGGAGGATAAATGGGAGGCTGGAGAGAAGAAAAATTAG

Network for GWHGAAZE026481

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	130	189	1.60E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.167
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.096
	SRR3591711	White flower	0.152
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.417
SRP173429	SRR8316895	Juvenile bud stage	0.090
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.062
	SRR8316894	Third green stage	0.060
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.205
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.120
	SRR8316902	Silver flowering stage	0.247
	SRR8316904	Silver flowering stage	0.238
	SRR8316905	Silver flowering stage	0.069
	SRR8316906	Gold flowering stage	1.005
	SRR8316907	Gold flowering stage	0.752
	SRR8316908	Gold flowering stage	3.064
SRP132670	SRR6706286	Control	0.227
	SRR6706287	Light intensity 50%	0.409
	SRR6706288	Light intensity 20%	0.126
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.059
	CNS0095594	Slightly white alabastrum(diploid) 3	0.128
	CNS0095595	Whole white alabastrum(diploid) 2	0.123
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.091
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.199
	CNS0095603	Golden flower (diploid) 3	0.302
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.043
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.144
	CNS0095614	Golden flower (tetraploid) 2	0.148
	CNS0095615	Golden flower (tetraploid) 3	0.036
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.048
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.337
	CRR073307	Third green 2	0.083
	CRR073308	Third green 3	0.185
	CRR073309	Second white 1	0.567
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.052
	CRR073312	Silver flowering 1	0.625
	CRR073313	Silver flowering 2	1.154
	CRR073314	Silver flowering 3	1.058
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.131
	CRR073318	Tawny withering 1	0.302
	CRR073319	Tawny withering 2	1.891
	CRR073320	Tawny withering 3	0.000