Gene detail

Detail information of GWHGAAZE026470

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009607538.1	0	PREDICTED: probable inactive receptor kinase At5g58300 [Nicotiana tomentosiformis]
COG	YP_002433868.1	2E-16	hypothetical protein Dalk_4722
Swissprot	tr\|Q9LVM0\|Y5830_ARATH	0	Probable inactive receptor kinase At5g58300 (Precursor)
trEMBL	tr\|A0A068UZZ4\|A0A068UZZ4_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_78 {ECO:0000313\|EMBL:CDP13882.1}
TAIR10	AT5G58300.2	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	5142704	5145177	+
GWHAAZE00000008	mRNA	5142704	5145177	+
GWHAAZE00000008	exon	5142704	5143946	+
GWHAAZE00000008	exon	5144549	5145177	+
GWHAAZE00000008	CDS	5142704	5143946	+
GWHAAZE00000008	CDS	5144549	5145177	+

Transcript Sequence
>GWHTAAZE026504 ATGAAGCTCCGACTCTTAGCAGTGCTTACTGCCCTGGTACTACTACTGCAGAATTCTCCACTAATTATCGCTGACTTGAGCTCTGATAGACAAGCCCTCCTAGCCTTTGCTGCTACAGTCCCACATCAACGGAATTTCAATTGGAATTTTTCTCTTCCATTATGCACCTCTTGGATTGGCGTCACTTGCAATGAGGATCGAACCAGAGTAATTGCTCTCCATCTTCCCGGTGTTGGACTATTCGGCTCCATCCCCCCTAACAGTATTGGAAAATTAGACGCTCTCAAAATCCTTAGCCTTCGGTCCAATTACCTCAATGGAAATCTTCCTTCTGATGTTCCTTCCATCCCTTCTCTCGAAGCTCTCTACCTTCAAAATAATAATTTCTCAGGTCAAATTCCTCTTTTTCTCTCTCCTCATCTTAGCATAATGGATCTCTCCTTCAACTCCTTTACTGGAAAGATTCCACCATCACTTAAAAATTTGTCTCGACTAACCTTGTTGGACCTCAAGTACAATTCATTCACCGGACCCATCCCTGATCTCAACCTGCCAAGGCTTAAGCTTTTCAATTTGAGCTACAACGTGTTAAATGGCTCTATCCCAAATTCACTTCAACATTTTCCGATTTCATCCTTTATTGGGAACTCTTTTTTATGCGGGCCACCTTTGAATCACTGCTCTGCAATACCGCCCCCTTCGGCCCCTTCACCTCCTACGAAACAGATGCTTGGTGCAGGTTCTATCACTGCCATTGCAGTAGGGGGATCCTCAATACTACTACTTCTAGTTTTAGTTTTATTATTCTGTTGTATAAAGAAAAATGGCAGCAATGAGATAGGCGCACTTAAAGGGAAGGCTTCAAATTGTGGACGGACCGAAAAACCTCAGGATTTTGGGAGTGGGGTCCAAGAAGCTGAGAAGAATAAGTTGGTGTTTTTCGAAGGGAGCTCTTATAACTTTGATCTCGAGGATTTGTTGAGGGCTTCGGCTGAAGTTCTTGGAAAAGGGACTTACGGAACGGCTTACAAGGCTGTTTTGGACGAGGGGACGACAGTTGTGGTGAAAAGGTTGAAGGAAGTAGTGGCTGGGAAGAAGGAGTTTGAACAGCATATGGAGCTTGTGGGTACTGTTGGACGGCACCCTAATGTTGTGCCGTTACGTGCTTATTACTATTCAAAGGATGAGAAGCTTCTTGTTTATGAGTACATGCCAGCAGGTAGCTTCTCTTCGGTATTGCACGGTAATAGAGGCATAGGAAGAACTCCACTAGACTGGGAATCAAGACTAAAGATCTCACTCGGAGCTGCTAGGGGCATTGCTCACATCCACTCCTTGGGTGGTGCTAAGTTCACCCACGGCAACATCAAGTCCTCCAACATCCTCCTCACCCAAGATCTCAATGGTTGCATAACCGATATTGGCTTAACACCCCTATTGAACCTCCTCGCTACCAAATCCCGAGGCACAGGTTACCGTGCACCAGAGGTGATCGAAACCCGAAAACCCACTCAAAAATCTGACGTATATAGCTTTGGGGTTATCCTCCTTGAGATGCTGACAGGTAAGGCCCCACTCCAGTCATCGGGCTACGATGAGGCTGTTGATCTACCTAGGTGGGTCCGGTCTGTGGTTAGGGAAGAGTGGACCGCTGAGGTTTTTGATGTGGAGCTAATGAGTTGCCAGAATGTTGAAGAGGAGTTGGTTCATATGCTACAACTTGCGCTTTCTTGTGTAGCTAAAGAACCGGATATGCGGCCCCCAATGGACGAAGTTGTGAGGATGATCGAGGAAATGCGATTATCCGAGTCCGAGACTCGTCCTTCGTCCGATGAAAATAGGTCTAAGGACTCTAATGTGCAAACCCCTTGA

Network for GWHGAAZE026470

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	27	64	8.50E-06
PF00560.34	LRR_1	141	162	0.9
PF00069.26	Pkinase	331	594	1.00E-35

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.577
	SRR3591706	second leaf	15.127
	SRR3591707	mature leaf	3.791
	SRR3591708	Shoot apex	39.401
	SRR3591709	Stem	17.421
	SRR3591710	White floral bud	6.759
	SRR3591711	White flower	4.331
	SRR3591712	Green floral bud	11.838
	SRR3591713	Yellow flower	0.610
SRP173429	SRR8316895	Juvenile bud stage	21.786
	SRR8316896	Juvenile bud stage	20.047
	SRR8316897	Juvenile bud stage	11.608
	SRR8316894	Third green stage	8.482
	SRR8316900	Third green stage	13.895
	SRR8316901	Third green stage	14.943
	SRR8316898	Complete white stage	1.372
	SRR8316899	Complete white stage	8.139
	SRR8316903	Complete white stage	3.871
	SRR8316902	Silver flowering stage	0.426
	SRR8316904	Silver flowering stage	1.127
	SRR8316905	Silver flowering stage	0.409
	SRR8316906	Gold flowering stage	0.326
	SRR8316907	Gold flowering stage	0.256
	SRR8316908	Gold flowering stage	0.687
SRP132670	SRR6706286	Control	10.355
	SRR6706287	Light intensity 50%	11.425
	SRR6706288	Light intensity 20%	12.548
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.431
	CNS0095593	Slightly white alabastrum(diploid) 2	18.830
	CNS0095594	Slightly white alabastrum(diploid) 3	12.331
	CNS0095595	Whole white alabastrum(diploid) 2	9.021
	CNS0095596	Whole white alabastrum(diploid) 3	7.483
	CNS0095597	Whole white alabastrum(diploid) 4	6.737
	CNS0095598	Silvery flower (diploied) 1	6.455
	CNS0095599	Silvery flower (diploied) 2	6.310
	CNS0095600	Silvery flower (diploied) 3	3.364
	CNS0095601	Golden flower (diploid) 1	6.452
	CNS0095602	Golden flower (diploid) 2	4.536
	CNS0095603	Golden flower (diploid) 3	5.127
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.721
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.357
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.880
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.237
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.143
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.931
	CNS0095610	Silvery flower (tetraploid) 1	0.874
	CNS0095611	Silvery flower (tetraploid) 2	2.490
	CNS0095612	Silvery flower (tetraploid) 3	1.362
	CNS0095613	Golden flower (tetraploid) 1	0.406
	CNS0095614	Golden flower (tetraploid) 2	0.283
	CNS0095615	Golden flower (tetraploid) 3	0.136
CRA001975	CRR073297	Stem 1	27.390
	CRR073298	Stem 2	23.954
	CRR073299	Stem 3	30.691
	CRR073300	Leaf 1	14.418
	CRR073301	Leaf 2	14.644
	CRR073302	Leaf 3	11.965
	CRR073303	Juvenile bud 1	8.920
	CRR073304	Juvenile bud 2	6.106
	CRR073305	Juvenile bud 3	10.194
	CRR073306	Third green 1	1.233
	CRR073307	Third green 2	1.567
	CRR073308	Third green 3	2.135
	CRR073309	Second white 1	0.280
	CRR073310	Second white 2	0.127
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.029
	CRR073313	Silver flowering 2	0.156
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	20.407
	CRR073316	Gold flowering 2	18.744
	CRR073317	Gold flowering 3	16.845
	CRR073318	Tawny withering 1	61.212
	CRR073319	Tawny withering 2	29.012
	CRR073320	Tawny withering 3	72.487