Gene detail

Detail information of GWHGAAZE026465

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010426309.1	2.2937E-137	PREDICTED: superoxide dismutase [Fe] 2, chloroplastic-like isoform X1 [Camelina sativa]
COG	YP_007045804.1	6E-70	superoxide dismutase
Swissprot	tr\|Q9LU64\|SODF2_ARATH	2E-136	Superoxide dismutase [Fe] 2, chloroplastic (Precursor)
trEMBL	tr\|D7U742\|D7U742_VITVI	1E-137	Superoxide dismutase {ECO:0000256\|RuleBase:RU000414}
TAIR10	AT5G51100.1	2E-106	Fe superoxide dismutase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	5049912	5053834	+
GWHAAZE00000008	mRNA	5049912	5053834	+
GWHAAZE00000008	exon	5049912	5049975	+
GWHAAZE00000008	exon	5050377	5050501	+
GWHAAZE00000008	exon	5051277	5051351	+
GWHAAZE00000008	exon	5051603	5051791	+
GWHAAZE00000008	exon	5052398	5052569	+
GWHAAZE00000008	exon	5052725	5052843	+
GWHAAZE00000008	exon	5053330	5053356	+
GWHAAZE00000008	exon	5053480	5053503	+
GWHAAZE00000008	exon	5053625	5053834	+
GWHAAZE00000008	CDS	5049912	5049975	+
GWHAAZE00000008	CDS	5050377	5050501	+
GWHAAZE00000008	CDS	5051277	5051351	+
GWHAAZE00000008	CDS	5051603	5051791	+
GWHAAZE00000008	CDS	5052398	5052569	+
GWHAAZE00000008	CDS	5052725	5052843	+
GWHAAZE00000008	CDS	5053330	5053356	+
GWHAAZE00000008	CDS	5053480	5053503	+
GWHAAZE00000008	CDS	5053625	5053834	+

Transcript Sequence
>GWHTAAZE026499 ATGGTTGTTGCAACATCAACGGCTACTCCGCTAACATGCGCCCCCGCCCTTCTTCCCAGACAAGACTTGGTAGTTCATCTTGGAAGTTGGAAACCATTGAGCATTTCTTGGAAGGGGATGCAAGGATTATGCGAGATTGGAGTGAGAGCTCATAGCATAGGGATTGTCGTCTTGCAATGTTCTGAGAATAAACAAGGTATAAGGAAAGCTGGTCTTGGGATAATAACTGCAAAAATTGAGCTGAAACCTCCTCCATATGCAGTGAATGCTTTGGAGCCACATATGAGCCAAGAAACACTGGAGTACCATTGGGGAAAACACCACAGAAGTTATGTGGAGAACCTAAACAATCAAATAACCGGAACCGAACTAGATGGAATGACATTGGAAAACATAATAATGGTTTCATACAACAGAGGCAGTTTCCTTCCAGCCTTCAATAATGCTGCACAGACTTGGAACCACGAATTCTTTTGGGAGTCTATGAAACCAGGTGGTGGAGGGATGCCAACCGGAAATCTTTTGAAACTGATTGACAGAGATTTTGGCTCTTTTGAAGCATTTGTTGAAGAGTTCAAGTTAGCTGCCTCCGCTCAGTTTGGTTCTGGTTGGGCTTGGCTTGCTTATAAAGCGAATAGACTCAACGTGGGAAATGCGGTAAATCCTTGTCCATCAGAGGAGGACAAGAAGCTAGTGATTGTGAACAGTCCCAATGCCGTGAATCCTCTCCTCTGGGATTACTCTCCACTCCTCACCATAGATGTTTGGGAGCATTCTTACTACCTTGACTTTCAGAACCGAAGGATCGACTACATAGCAACGTTTATGGATAAGCTTGTATCGTGGGAAGTAGTAAGTTCGAGGCTTGAGATTGCAATGGACAAAGCTACCAGAAGGGAGAGTGAAGAACAGAAGAGGAAAGAGGAAGAAGACGGGCAAAAAGCGGGAAGAGAATTCAAAGAGATGTACATGGAAAGTGACGGTGATGATTCAGATCTTGAATGA

Network for GWHGAAZE026465

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00081.23	Sod_Fe_N	80	163	3.30E-24
PF02777.19	Sod_Fe_C	170	288	4.30E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04564	SOD2	MAPK signaling pathway - fly	map04013
		FoxO signaling pathway	map04068
		Peroxisome	map04146
		Longevity regulating pathway	map04211
		Longevity regulating pathway - worm	map04212
		Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0006801	biological_process	superoxide metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0004784	molecular_function	superoxide dismutase activity
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.691
	SRR3591706	second leaf	46.399
	SRR3591707	mature leaf	28.556
	SRR3591708	Shoot apex	74.983
	SRR3591709	Stem	12.414
	SRR3591710	White floral bud	35.051
	SRR3591711	White flower	46.646
	SRR3591712	Green floral bud	41.071
	SRR3591713	Yellow flower	50.024
SRP173429	SRR8316895	Juvenile bud stage	15.064
	SRR8316896	Juvenile bud stage	20.884
	SRR8316897	Juvenile bud stage	13.624
	SRR8316894	Third green stage	10.226
	SRR8316900	Third green stage	41.637
	SRR8316901	Third green stage	33.357
	SRR8316898	Complete white stage	13.557
	SRR8316899	Complete white stage	28.274
	SRR8316903	Complete white stage	13.178
	SRR8316902	Silver flowering stage	19.269
	SRR8316904	Silver flowering stage	22.992
	SRR8316905	Silver flowering stage	13.455
	SRR8316906	Gold flowering stage	42.643
	SRR8316907	Gold flowering stage	35.413
	SRR8316908	Gold flowering stage	37.498
SRP132670	SRR6706286	Control	35.395
	SRR6706287	Light intensity 50%	31.660
	SRR6706288	Light intensity 20%	37.471
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.159
	CNS0095593	Slightly white alabastrum(diploid) 2	16.315
	CNS0095594	Slightly white alabastrum(diploid) 3	11.886
	CNS0095595	Whole white alabastrum(diploid) 2	19.880
	CNS0095596	Whole white alabastrum(diploid) 3	25.875
	CNS0095597	Whole white alabastrum(diploid) 4	17.646
	CNS0095598	Silvery flower (diploied) 1	21.730
	CNS0095599	Silvery flower (diploied) 2	17.360
	CNS0095600	Silvery flower (diploied) 3	22.638
	CNS0095601	Golden flower (diploid) 1	19.777
	CNS0095602	Golden flower (diploid) 2	18.139
	CNS0095603	Golden flower (diploid) 3	20.503
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.411
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.930
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.284
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.916
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.720
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.107
	CNS0095610	Silvery flower (tetraploid) 1	25.547
	CNS0095611	Silvery flower (tetraploid) 2	38.765
	CNS0095612	Silvery flower (tetraploid) 3	40.312
	CNS0095613	Golden flower (tetraploid) 1	19.947
	CNS0095614	Golden flower (tetraploid) 2	21.080
	CNS0095615	Golden flower (tetraploid) 3	23.321
CRA001975	CRR073297	Stem 1	34.581
	CRR073298	Stem 2	31.431
	CRR073299	Stem 3	30.609
	CRR073300	Leaf 1	37.818
	CRR073301	Leaf 2	32.909
	CRR073302	Leaf 3	42.021
	CRR073303	Juvenile bud 1	44.039
	CRR073304	Juvenile bud 2	43.844
	CRR073305	Juvenile bud 3	28.013
	CRR073306	Third green 1	31.910
	CRR073307	Third green 2	13.025
	CRR073308	Third green 3	23.139
	CRR073309	Second white 1	25.306
	CRR073310	Second white 2	32.031
	CRR073311	Second white 3	19.241
	CRR073312	Silver flowering 1	26.498
	CRR073313	Silver flowering 2	23.237
	CRR073314	Silver flowering 3	21.455
	CRR073315	Gold flowering 1	33.467
	CRR073316	Gold flowering 2	44.058
	CRR073317	Gold flowering 3	20.778
	CRR073318	Tawny withering 1	12.888
	CRR073319	Tawny withering 2	12.668
	CRR073320	Tawny withering 3	16.254