Gene detail

Detail information of GWHGAAZE026458

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP22495.1	1.6141E-114	hypothetical protein JCGZ_26326 [Jatropha curcas]
COG	YP_004346183.1	0.000000008	RNP-1 like RNA-binding protein
Swissprot	tr\|Q9FJN9\|PABN2_ARATH	1E-88	Polyadenylate-binding protein 2 {ECO:0000303\|PubMed:18479511}
trEMBL	tr\|A0A067JR63\|A0A067JR63_JATCU	6E-115	Uncharacterized protein {ECO:0000313\|EMBL:KDP22495.1}
TAIR10	AT5G65260.1	1E-59	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	4962448	4975693	+
GWHAAZE00000008	mRNA	4962448	4975693	+
GWHAAZE00000008	exon	4962448	4962621	+
GWHAAZE00000008	exon	4962707	4962904	+
GWHAAZE00000008	exon	4973920	4974111	+
GWHAAZE00000008	exon	4974212	4974342	+
GWHAAZE00000008	exon	4975346	4975693	+
GWHAAZE00000008	five_prime_UTR	4962448	4962492	+
GWHAAZE00000008	CDS	4962493	4962621	+
GWHAAZE00000008	CDS	4962707	4962904	+
GWHAAZE00000008	CDS	4973920	4974111	+
GWHAAZE00000008	CDS	4974212	4974342	+
GWHAAZE00000008	CDS	4975346	4975391	+
GWHAAZE00000008	three_prime_UTR	4975392	4975693	+

Transcript Sequence
>GWHTAAZE026492 TCCTGTATCTATAGAGAGAGAAACTAACAGCGAGGAGAGAGAAATATGGAGCATCACGAGGAAGAGCAATTAGAGCACGAAGACGAAGCCTACGGAGGAGAAATACCAGACGAGGGAGAGATGGAAGCTGACGTCGAAATGTCGAGGATTGAAGAGGAAGAACATGATTCTAAAGATTTGGAGGAGATGAAGAATAGACTGAAGGAGATGGAAGAGGAAGCTGGTGCTCTTCGCGAAATGCAGGCTAAAGTGGAGAAGGAAATGGGGGCTGTTCAAGGTGGAGACACTCACTCTCTAAACTATTTTACTTACATGTTCTGTTCTTTTAAAAAGTTGTATGATTGTACTGTTAGTTGGATCTTTTCTTTGTATGTAGACTATGCATGTACGCCAGAGGAGGTCCAGCAGCACTTCCAGTCCTGTGGAACTGTAAACAGAGTTACGATATTAACAGACAAGTTTGGTCAACCTAAAGGCTTTGCTTATGTAGAATTTGTGGAAGTTGATGCAATTCAGAATGCTCTGCTCTTAAACGAGTCAGAGTTACATGGTCGTCAATTAAAGGTAGCTGCTAAGCGCACTAACGTTCCTGGTATGAAGCAATTTCGGGGAAGGCGTCCCAATCCATATTTTGGTTTTCGAGGCCGAAGGCCCTTCATGCCTGGTGCACCAGTCTTTCCTCCATATGGTTATGGAAGGGTTCCAAGGGGCAGGCGGCCAATGCGTTACCGGCCTTACTGAAAACAGATCACTTGTACCAATAGCATAAACCTATTTATTTGAACCAATGGCCTTTATTTGACGAAAGAAGCGGTATTTTCTGGAGTCTAGAAGGTAAATTTCCCTAAGAATTTGTACCATTATTGTACTTTCATTAATGCTGGAGAGGCCTGGACTTCATTTTACCTTGTACGAACGTTTTGTAGTTGAATCTTCATTTGCTTGCATATTTTTATACATGCTTTGGTCAAAAGAAGGGTTATAACCGTAATTTTCTTTTTGTTTTTATAGAAATTTAATTCGCGTAATGCTGTTAGATTTAA

Network for GWHGAAZE026458

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	111	173	5.50E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14396	PABPN1, PABP2	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.560
	SRR3591706	second leaf	29.177
	SRR3591707	mature leaf	24.370
	SRR3591708	Shoot apex	42.942
	SRR3591709	Stem	30.185
	SRR3591710	White floral bud	35.538
	SRR3591711	White flower	42.850
	SRR3591712	Green floral bud	31.997
	SRR3591713	Yellow flower	42.573
SRP173429	SRR8316895	Juvenile bud stage	26.543
	SRR8316896	Juvenile bud stage	32.472
	SRR8316897	Juvenile bud stage	19.192
	SRR8316894	Third green stage	13.158
	SRR8316900	Third green stage	39.086
	SRR8316901	Third green stage	39.573
	SRR8316898	Complete white stage	16.804
	SRR8316899	Complete white stage	41.809
	SRR8316903	Complete white stage	29.706
	SRR8316902	Silver flowering stage	20.022
	SRR8316904	Silver flowering stage	22.944
	SRR8316905	Silver flowering stage	11.387
	SRR8316906	Gold flowering stage	38.424
	SRR8316907	Gold flowering stage	39.830
	SRR8316908	Gold flowering stage	39.296
SRP132670	SRR6706286	Control	41.964
	SRR6706287	Light intensity 50%	47.418
	SRR6706288	Light intensity 20%	46.911
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.854
	CNS0095593	Slightly white alabastrum(diploid) 2	38.543
	CNS0095594	Slightly white alabastrum(diploid) 3	32.466
	CNS0095595	Whole white alabastrum(diploid) 2	28.748
	CNS0095596	Whole white alabastrum(diploid) 3	28.147
	CNS0095597	Whole white alabastrum(diploid) 4	22.711
	CNS0095598	Silvery flower (diploied) 1	29.701
	CNS0095599	Silvery flower (diploied) 2	31.512
	CNS0095600	Silvery flower (diploied) 3	34.473
	CNS0095601	Golden flower (diploid) 1	29.785
	CNS0095602	Golden flower (diploid) 2	32.985
	CNS0095603	Golden flower (diploid) 3	32.667
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.318
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.773
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.610
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.487
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.404
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.943
	CNS0095610	Silvery flower (tetraploid) 1	40.289
	CNS0095611	Silvery flower (tetraploid) 2	34.751
	CNS0095612	Silvery flower (tetraploid) 3	42.819
	CNS0095613	Golden flower (tetraploid) 1	37.981
	CNS0095614	Golden flower (tetraploid) 2	35.584
	CNS0095615	Golden flower (tetraploid) 3	31.005
CRA001975	CRR073297	Stem 1	30.921
	CRR073298	Stem 2	34.405
	CRR073299	Stem 3	29.900
	CRR073300	Leaf 1	32.695
	CRR073301	Leaf 2	32.870
	CRR073302	Leaf 3	34.422
	CRR073303	Juvenile bud 1	26.297
	CRR073304	Juvenile bud 2	26.637
	CRR073305	Juvenile bud 3	19.699
	CRR073306	Third green 1	24.655
	CRR073307	Third green 2	23.712
	CRR073308	Third green 3	25.231
	CRR073309	Second white 1	13.411
	CRR073310	Second white 2	22.941
	CRR073311	Second white 3	19.646
	CRR073312	Silver flowering 1	12.958
	CRR073313	Silver flowering 2	9.090
	CRR073314	Silver flowering 3	15.354
	CRR073315	Gold flowering 1	18.111
	CRR073316	Gold flowering 2	23.208
	CRR073317	Gold flowering 3	7.660
	CRR073318	Tawny withering 1	31.504
	CRR073319	Tawny withering 2	36.508
	CRR073320	Tawny withering 3	33.263