Gene detail

Detail information of GWHGAAZE026456

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010523287.1	0	PREDICTED: glutamate dehydrogenase 2 [Tarenaya hassleriana]
COG	YP_634010.1	5E-149	glutamate dehydrogenase
Swissprot	tr\|Q38946\|DHE2_ARATH	0	Glutamate dehydrogenase 2
trEMBL	tr\|A0A087G5H7\|A0A087G5H7_ARAAL	0	Glutamate dehydrogenase {ECO:0000256\|PIRNR:PIRNR000185}
TAIR10	AT5G07440.2	0	glutamate dehydrogenase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	4932191	4936974	-
GWHAAZE00000008	mRNA	4932191	4936974	-
GWHAAZE00000008	exon	4932191	4932376	-
GWHAAZE00000008	exon	4933051	4933137	-
GWHAAZE00000008	exon	4933210	4933285	-
GWHAAZE00000008	exon	4933824	4934074	-
GWHAAZE00000008	exon	4934397	4934513	-
GWHAAZE00000008	exon	4935024	4935098	-
GWHAAZE00000008	exon	4935272	4935493	-
GWHAAZE00000008	exon	4936727	4936783	-
GWHAAZE00000008	exon	4936867	4936974	-
GWHAAZE00000008	CDS	4936867	4936974	-
GWHAAZE00000008	CDS	4936727	4936783	-
GWHAAZE00000008	CDS	4935272	4935493	-
GWHAAZE00000008	CDS	4935024	4935098	-
GWHAAZE00000008	CDS	4934397	4934513	-
GWHAAZE00000008	CDS	4933824	4934074	-
GWHAAZE00000008	CDS	4933210	4933285	-
GWHAAZE00000008	CDS	4933051	4933137	-
GWHAAZE00000008	CDS	4932191	4932376	-

Transcript Sequence
>GWHTAAZE026490 ATGAACGCTCTCGCAGCTACTAACCGCAATTTTCGCCATGCGGCTCGCATTCTCGGGTTAGACTCCAAGCTCGAGAAGAGTCTTTTGATCCCATTTAGAGAAATCAAGGTGGAGTGCACAATTCCCAAGGATGATGGAACTCTGGCCTCCTTTGTCGGATTTAGAGTTGACCCTGATGAGGTAAATGCTCTAGCTCAACTAATGACTTGGAAGACTGCTGTAGCTGACATTCCCTATGGTGGAGCTAAGGGTGGGATTGGGTGCAGCCCTAGGGATTTAAGTAAAAGTGAGTTGGAGCGGCTTACTCGGGTCTTCACTCAAAAGATTCACGATCTTATAGGTGTTAATACCGATGTACCCGCACCAGATATGGGCACTAATGGGCAGACTATGGCTTGGATTCTGGACGAGTACTCAAAATTTCATGGTCATTCACCGGCTATTGTGACTGGAAAGCCAATAGATCTTGGTGGATCACTGGGTAGGGAAGCTGCAACGGGGCGTGGTGTTGTTTTCGGAATGGAAGCTTTACTTGCTGAATTTGGAAAGTCAGTTAAGGGTCTCACATTTGCTATTCAGGGTTTTGGAAATGTGGGTTCTTGGGCGGCAAGGCTGATTCATGAGAGAGGTGGTAAGGTGATTGCGGTGAGTGACATTACTGGAGCTGTTAAGAACAATGATGGGATCGACATACCAGCTTTACTTCAGCATAAAGATACAACAGGGACCTTAGTTAATTTCAACGGTGGAGATGCCATGAATTCAGATGATTTGCTTGTACACGAGTGCGATGTTCTCGTTCCATGTGCACTAGGTGGAGTTCTAAACAGACAAAATGCAGGAGATGTTAAAGCCAAGTTTATAATAGAAGCAGCAAATCATCCTACGGATCCAGATGCGGATGAGATTCTGTCGAAGAAAGGAGTTGTAATACTGCCTGATATATATGCAAATGCTGGAGGTGTGACTGTTAGCTATTTTGAGTGGGTTCAGAATATTCAAGGTTTTATGTGGGATGAAGAGAAGGTTAACAAGGAGCTGAAGAAGTACATGACGAGGGCTTTTGCAAACATAAAGACAATGTGCAACTCCCACAACTGCAACCTCCGTATGGGTGCCTTCACTCTCGGTGTTAACCGCGTTGCCCGTGCCACCCTTTTAAGGGGCTGGGAAGCTTAA

Network for GWHGAAZE026456

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02812.19	ELFV_dehydrog_N	56	140	4.80E-32
PF00208.22	ELFV_dehydrog	157	389	1.40E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00261	GLUD1_2, gdhA	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Nitrogen metabolism	map00910
		Alanine, aspartate and glutamate metabolism	map00250
		Arginine biosynthesis	map00220
		D-Glutamine and D-glutamate metabolism	map00471
		Necroptosis	map04217
		Proximal tubule bicarbonate reclamation	map04964

Gene Ontology

GO term	Ontology	Name
GO:0006520	biological_process	cellular amino acid metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0016639	molecular_function	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.962
	SRR3591706	second leaf	7.604
	SRR3591707	mature leaf	11.257
	SRR3591708	Shoot apex	6.801
	SRR3591709	Stem	30.247
	SRR3591710	White floral bud	62.368
	SRR3591711	White flower	33.171
	SRR3591712	Green floral bud	81.821
	SRR3591713	Yellow flower	21.634
SRP173429	SRR8316895	Juvenile bud stage	57.570
	SRR8316896	Juvenile bud stage	78.485
	SRR8316897	Juvenile bud stage	42.911
	SRR8316894	Third green stage	22.735
	SRR8316900	Third green stage	68.186
	SRR8316901	Third green stage	71.887
	SRR8316898	Complete white stage	16.636
	SRR8316899	Complete white stage	23.196
	SRR8316903	Complete white stage	26.995
	SRR8316902	Silver flowering stage	16.076
	SRR8316904	Silver flowering stage	21.676
	SRR8316905	Silver flowering stage	13.132
	SRR8316906	Gold flowering stage	33.732
	SRR8316907	Gold flowering stage	35.768
	SRR8316908	Gold flowering stage	24.852
SRP132670	SRR6706286	Control	60.289
	SRR6706287	Light intensity 50%	58.977
	SRR6706288	Light intensity 20%	55.921
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.442
	CNS0095593	Slightly white alabastrum(diploid) 2	31.727
	CNS0095594	Slightly white alabastrum(diploid) 3	68.077
	CNS0095595	Whole white alabastrum(diploid) 2	40.663
	CNS0095596	Whole white alabastrum(diploid) 3	55.015
	CNS0095597	Whole white alabastrum(diploid) 4	40.663
	CNS0095598	Silvery flower (diploied) 1	13.880
	CNS0095599	Silvery flower (diploied) 2	20.361
	CNS0095600	Silvery flower (diploied) 3	23.031
	CNS0095601	Golden flower (diploid) 1	15.519
	CNS0095602	Golden flower (diploid) 2	20.269
	CNS0095603	Golden flower (diploid) 3	20.622
	CNS0095604	Slightly white alabastrum(tetraploid) 1	65.880
	CNS0095605	Slightly white alabastrum(tetraploid) 2	53.144
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.483
	CNS0095607	Whole white alabastrum(tetraploid) 1	68.568
	CNS0095608	Whole white alabastrum(tetraploid) 2	71.747
	CNS0095609	Whole white alabastrum(tetraploid) 3	117.231
	CNS0095610	Silvery flower (tetraploid) 1	25.098
	CNS0095611	Silvery flower (tetraploid) 2	12.691
	CNS0095612	Silvery flower (tetraploid) 3	24.152
	CNS0095613	Golden flower (tetraploid) 1	19.283
	CNS0095614	Golden flower (tetraploid) 2	20.319
	CNS0095615	Golden flower (tetraploid) 3	8.200
CRA001975	CRR073297	Stem 1	77.569
	CRR073298	Stem 2	56.564
	CRR073299	Stem 3	68.297
	CRR073300	Leaf 1	25.522
	CRR073301	Leaf 2	27.497
	CRR073302	Leaf 3	22.456
	CRR073303	Juvenile bud 1	16.087
	CRR073304	Juvenile bud 2	12.943
	CRR073305	Juvenile bud 3	14.276
	CRR073306	Third green 1	15.554
	CRR073307	Third green 2	24.729
	CRR073308	Third green 3	18.689
	CRR073309	Second white 1	29.738
	CRR073310	Second white 2	35.850
	CRR073311	Second white 3	45.659
	CRR073312	Silver flowering 1	48.393
	CRR073313	Silver flowering 2	45.052
	CRR073314	Silver flowering 3	54.317
	CRR073315	Gold flowering 1	7.852
	CRR073316	Gold flowering 2	4.286
	CRR073317	Gold flowering 3	1.499
	CRR073318	Tawny withering 1	5.836
	CRR073319	Tawny withering 2	7.746
	CRR073320	Tawny withering 3	5.661