Gene detail

Detail information of GWHGAAZE026440

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AES92926.1	1.64639E-79	transcription factor ERF1 [Panax quinquefolius]
Swissprot	tr\|Q40478\|ERF5_TOBAC	3E-78	Ethylene-responsive transcription factor 5
trEMBL	tr\|X2BY49\|X2BY49_PANQU	6E-80	Transcription factor ERF1 {ECO:0000313\|EMBL:AES92926.1}
TAIR10	AT5G51190.1	2E-36	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	4726927	4727739	-
GWHAAZE00000008	mRNA	4726927	4727739	-
GWHAAZE00000008	exon	4726927	4727739	-
GWHAAZE00000008	CDS	4726927	4727739	-

Transcript Sequence
>GWHTAAZE026474 ATGGCCTCCCTCAATCTCAATAATGAAGACTCAGCTCTAGACCTCATCCGCCTCCATCTCCTGGACGACGTAGCTTTCGTGGAGAACTACTGTATCCCTAATATCTCTCACAACAACAACAACTCCCAATCCTCCACCTCCTCCGAATCTCACAATTCAATCGATACTTACAATAGTTCTATCACTAATGAGTTCAATTCATCCTTCCAATTCGAAACTAAACCTAATATAACAACAACAACAACAATCAATTCAAAGCAATCCACCTTCACCGATCGCAAACCATCTCTCAACATATCTATTCCGCCTGTCAAGAAAGTTGAGCGCGGCGGTGCTTATTTGGATCCACCGGTGAAGTTGAATTGCCCGAAAGAGGACGATTCCGCCGACAAGAGGCACTACAGAGGTGTTAGGCGTCGGCCCTGGGGGAAATTCGCGGCCGAGATTCGAGATCCCAGTCGGAAAGGAGCTAGGGTTTGGCTAGGGACTTTTGAAACCGCTGTTGAAGCGGCTAGGGCTTATGATAGGGCGGCGTTTAAGCTTCGTGGAAGCAAAGCGATAATTAATTTTCCACTAGAGATAGGGAATTCGACGGAATCTGAAGCTCCGGCGGTTGGTCGTAAAAGAGGCAGAGAGGCGGAGATTGTCGAGAGTAAGGCGGTGAAGAGGACGGATAATGTAACGGTGTCTGTTTGTCCGTTAACGCCGTCAAGTTGGATGGCGGTTTGGGACTGTAGTGACGGGAAGGGTATATTTGAGGTTCCGCCGTTATCGCCTTATCCTATTTATGGCTGCGGTGACATGAGATGTTAA

Network for GWHGAAZE026440

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	133	183	1.50E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	115.011
	SRR3591706	second leaf	69.627
	SRR3591707	mature leaf	54.771
	SRR3591708	Shoot apex	133.259
	SRR3591709	Stem	307.895
	SRR3591710	White floral bud	89.214
	SRR3591711	White flower	136.485
	SRR3591712	Green floral bud	44.793
	SRR3591713	Yellow flower	41.729
SRP173429	SRR8316895	Juvenile bud stage	94.185
	SRR8316896	Juvenile bud stage	32.892
	SRR8316897	Juvenile bud stage	39.051
	SRR8316894	Third green stage	62.500
	SRR8316900	Third green stage	81.465
	SRR8316901	Third green stage	90.853
	SRR8316898	Complete white stage	5.730
	SRR8316899	Complete white stage	170.393
	SRR8316903	Complete white stage	12.266
	SRR8316902	Silver flowering stage	19.685
	SRR8316904	Silver flowering stage	14.666
	SRR8316905	Silver flowering stage	16.565
	SRR8316906	Gold flowering stage	100.012
	SRR8316907	Gold flowering stage	75.921
	SRR8316908	Gold flowering stage	81.082
SRP132670	SRR6706286	Control	54.116
	SRR6706287	Light intensity 50%	59.034
	SRR6706288	Light intensity 20%	50.236
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.419
	CNS0095593	Slightly white alabastrum(diploid) 2	80.814
	CNS0095594	Slightly white alabastrum(diploid) 3	67.000
	CNS0095595	Whole white alabastrum(diploid) 2	30.093
	CNS0095596	Whole white alabastrum(diploid) 3	13.596
	CNS0095597	Whole white alabastrum(diploid) 4	45.091
	CNS0095598	Silvery flower (diploied) 1	242.664
	CNS0095599	Silvery flower (diploied) 2	126.513
	CNS0095600	Silvery flower (diploied) 3	101.751
	CNS0095601	Golden flower (diploid) 1	208.675
	CNS0095602	Golden flower (diploid) 2	131.606
	CNS0095603	Golden flower (diploid) 3	132.740
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.886
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.952
	CNS0095606	Slightly white alabastrum(tetraploid) 3	60.301
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.941
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.488
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.430
	CNS0095610	Silvery flower (tetraploid) 1	38.165
	CNS0095611	Silvery flower (tetraploid) 2	24.543
	CNS0095612	Silvery flower (tetraploid) 3	23.817
	CNS0095613	Golden flower (tetraploid) 1	38.449
	CNS0095614	Golden flower (tetraploid) 2	30.057
	CNS0095615	Golden flower (tetraploid) 3	41.326
CRA001975	CRR073297	Stem 1	51.037
	CRR073298	Stem 2	62.657
	CRR073299	Stem 3	62.942
	CRR073300	Leaf 1	106.782
	CRR073301	Leaf 2	132.087
	CRR073302	Leaf 3	93.187
	CRR073303	Juvenile bud 1	116.447
	CRR073304	Juvenile bud 2	67.550
	CRR073305	Juvenile bud 3	278.177
	CRR073306	Third green 1	155.116
	CRR073307	Third green 2	123.935
	CRR073308	Third green 3	136.314
	CRR073309	Second white 1	80.991
	CRR073310	Second white 2	46.679
	CRR073311	Second white 3	56.322
	CRR073312	Silver flowering 1	35.763
	CRR073313	Silver flowering 2	26.977
	CRR073314	Silver flowering 3	15.562
	CRR073315	Gold flowering 1	211.661
	CRR073316	Gold flowering 2	168.187
	CRR073317	Gold flowering 3	265.789
	CRR073318	Tawny withering 1	183.236
	CRR073319	Tawny withering 2	164.145
	CRR073320	Tawny withering 3	215.084