Gene detail

Detail information of GWHGAAZE026438

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010062614.1	0	PREDICTED: ATP-dependent 6-phosphofructokinase 4, chloroplastic [Eucalyptus grandis]
COG	YP_003804939.1	3E-118	phosphofructokinase
Swissprot	tr\|Q9FKG3\|PFKA4_ARATH	0	ATP-dependent 6-phosphofructokinase 4, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_03186} (Precursor)
trEMBL	tr\|A0A059DKF9\|A0A059DKF9_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW90877.1}
TAIR10	AT5G61580.1	0	phosphofructokinase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	4683973	4700620	+
GWHAAZE00000008	mRNA	4683973	4700620	+
GWHAAZE00000008	exon	4683973	4684019	+
GWHAAZE00000008	exon	4684092	4684176	+
GWHAAZE00000008	exon	4684267	4684329	+
GWHAAZE00000008	exon	4684422	4684559	+
GWHAAZE00000008	exon	4686477	4686635	+
GWHAAZE00000008	exon	4686719	4686772	+
GWHAAZE00000008	exon	4686843	4686953	+
GWHAAZE00000008	exon	4687296	4687425	+
GWHAAZE00000008	exon	4687549	4687589	+
GWHAAZE00000008	exon	4689457	4689681	+
GWHAAZE00000008	exon	4693345	4693393	+
GWHAAZE00000008	exon	4694427	4694581	+
GWHAAZE00000008	exon	4700453	4700620	+
GWHAAZE00000008	CDS	4683973	4684019	+
GWHAAZE00000008	CDS	4684092	4684176	+
GWHAAZE00000008	CDS	4684267	4684329	+
GWHAAZE00000008	CDS	4684422	4684559	+
GWHAAZE00000008	CDS	4686477	4686635	+
GWHAAZE00000008	CDS	4686719	4686772	+
GWHAAZE00000008	CDS	4686843	4686953	+
GWHAAZE00000008	CDS	4687296	4687425	+
GWHAAZE00000008	CDS	4687549	4687589	+
GWHAAZE00000008	CDS	4689457	4689681	+
GWHAAZE00000008	CDS	4693345	4693393	+
GWHAAZE00000008	CDS	4694427	4694581	+
GWHAAZE00000008	CDS	4700453	4700620	+

Transcript Sequence
>GWHTAAZE026472 TCGTATCCAAACCCATTGCACAAGAGCCAAGCTTATGCAATAGTCAAGGTCTCATTCCTTGGTAATTATACAAACTTCCTTTTCTTGTCCAGGAAGACTTTCGTCAGCCCTGAAGATGTGGTGGCACACGACATTGTTGTTCAAAAGGACAGTCCTAGAGGGCTACATTTTCGGCGTGCAGGGCCTCGTGAAATAGTCTATTTCAAATCAGAGGAAGTGCGTGCTTGTATTGTGACCTGTGGTGGATTATGCCCTGGGATCAACACGGTGATCAGGGAAATAGTATGTGGCTTAAATTATATGTATGGTGTTGATGATATACTCGGAATTGAGGGAGGATATCGTGGTTTTTACTCTAAAAACACCATGAAATTGAATCCAAAAGTTGTCAACGATATCCATAAACGCGGTGGCACCTTTCTTCAAACATCACGAGGAGGCCATGATACCAACAAGATAGTTGATAACATCGAGGATCGGGGGATAAATCAGGTGTATATAATCGGAGGTGATGGTACCCAAAAAGGAGCAGCTGCAATTTCCAAGACATCTAATGGGAGGATGTTGTACTTGCATATTTTTGTCAAGGAAGTTGAAAAACGTGGTCTTCCGGTGGCAGTAGCTGGAATCCCCAAGACAATCGACAATGATATAGCAGTGATAGACAAGTCTTTTGGTTTTGATACGGCTGTCGAAGAAGCTCAGAGAGCCATTAACGCTGCGCATGTGGAGGTTGAGAGTGTGGAAAATGGAATTGGAATCGTAAAACTTATGGGTCGATACAGTGGGTTCATTGCTATGTTTGCAACCTTGGCGAGCCGAGATGTGGATTGTTGCTTAATTCCAGAGTCACCATTCTATCTGGAAGGCCGGGGTGGGCTCTTTGAGTTTATCGAACAGAAGCTTAAAGAAAATAGGCACGTGGTGATTGTACTGGCAGAAGGAGCAGGGCAGGAATATGTTGCTCAGAGCATTCATGCAGTTGATGAGAGAGATGCATCAGGGAACAGGCTGCTTCTTGATGCTGGTCTATGGTTAACTCAACAGATTAAGGATCATTTTACAAAGGTCCAGAAGATGGCAGTTAACATGAAATATATAGATCCAACATACATGATCAGAGCTATTCCAAGTAATGCATCAGACAATATCTACTGTACACTTCTAGCTCAGAGTGCTGTGCATGGGGCCATGGCAGGATACACTGGCTTCACGGTTGGACCTGTAAACAGCAGACACGCTTATATTCCAATTGCGCGGGTGACCGCCTCTCCAAACACTGTCAAGTTGACTGACAGAATGTGGGCTAGACTTCTTGCATCCACTAATCAACCCAGTTTTCTACAAGGCAATGGGGCTATGCAAGAAACACTTGAGCGAGAGACTATAGATACGATCAACAACATGAAGTCTACTTCTATTTAA

Network for GWHGAAZE026438

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00365.21	PFK	76	395	1.80E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00850	pfkA, PFK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Pentose phosphate pathway	map00030
		Fructose and mannose metabolism	map00051
		Galactose metabolism	map00052
		Methane metabolism	map00680
		RNA degradation	map03018
		HIF-1 signaling pathway	map04066
		AMPK signaling pathway	map04152
		Glucagon signaling pathway	map04922
		Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0006002	biological_process	fructose 6-phosphate metabolic process
GO:0003872	molecular_function	6-phosphofructokinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.029
	SRR3591706	second leaf	12.256
	SRR3591707	mature leaf	15.624
	SRR3591708	Shoot apex	12.778
	SRR3591709	Stem	11.238
	SRR3591710	White floral bud	25.022
	SRR3591711	White flower	44.258
	SRR3591712	Green floral bud	19.304
	SRR3591713	Yellow flower	50.742
SRP173429	SRR8316895	Juvenile bud stage	12.547
	SRR8316896	Juvenile bud stage	19.373
	SRR8316897	Juvenile bud stage	11.168
	SRR8316894	Third green stage	7.245
	SRR8316900	Third green stage	17.465
	SRR8316901	Third green stage	21.423
	SRR8316898	Complete white stage	6.437
	SRR8316899	Complete white stage	19.909
	SRR8316903	Complete white stage	12.932
	SRR8316902	Silver flowering stage	15.721
	SRR8316904	Silver flowering stage	18.820
	SRR8316905	Silver flowering stage	9.668
	SRR8316906	Gold flowering stage	36.141
	SRR8316907	Gold flowering stage	37.995
	SRR8316908	Gold flowering stage	42.793
SRP132670	SRR6706286	Control	16.930
	SRR6706287	Light intensity 50%	16.033
	SRR6706288	Light intensity 20%	17.421
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.596
	CNS0095593	Slightly white alabastrum(diploid) 2	9.202
	CNS0095594	Slightly white alabastrum(diploid) 3	8.337
	CNS0095595	Whole white alabastrum(diploid) 2	9.269
	CNS0095596	Whole white alabastrum(diploid) 3	8.462
	CNS0095597	Whole white alabastrum(diploid) 4	7.370
	CNS0095598	Silvery flower (diploied) 1	15.096
	CNS0095599	Silvery flower (diploied) 2	15.137
	CNS0095600	Silvery flower (diploied) 3	27.432
	CNS0095601	Golden flower (diploid) 1	12.958
	CNS0095602	Golden flower (diploid) 2	30.472
	CNS0095603	Golden flower (diploid) 3	31.705
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.039
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.893
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.745
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.109
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.080
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.357
	CNS0095610	Silvery flower (tetraploid) 1	40.819
	CNS0095611	Silvery flower (tetraploid) 2	37.291
	CNS0095612	Silvery flower (tetraploid) 3	45.905
	CNS0095613	Golden flower (tetraploid) 1	37.035
	CNS0095614	Golden flower (tetraploid) 2	47.838
	CNS0095615	Golden flower (tetraploid) 3	49.293
CRA001975	CRR073297	Stem 1	19.387
	CRR073298	Stem 2	16.963
	CRR073299	Stem 3	17.340
	CRR073300	Leaf 1	22.462
	CRR073301	Leaf 2	20.993
	CRR073302	Leaf 3	14.647
	CRR073303	Juvenile bud 1	13.919
	CRR073304	Juvenile bud 2	13.445
	CRR073305	Juvenile bud 3	14.086
	CRR073306	Third green 1	18.474
	CRR073307	Third green 2	11.456
	CRR073308	Third green 3	13.702
	CRR073309	Second white 1	24.103
	CRR073310	Second white 2	36.673
	CRR073311	Second white 3	37.016
	CRR073312	Silver flowering 1	38.017
	CRR073313	Silver flowering 2	39.043
	CRR073314	Silver flowering 3	41.687
	CRR073315	Gold flowering 1	27.153
	CRR073316	Gold flowering 2	34.397
	CRR073317	Gold flowering 3	16.490
	CRR073318	Tawny withering 1	13.236
	CRR073319	Tawny withering 2	11.400
	CRR073320	Tawny withering 3	10.279