Gene detail

Detail information of GWHGAAZE026431

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009789263.1	1.0208E-167	PREDICTED: putative kinase-like protein TMKL1 [Nicotiana sylvestris]
COG	NP_623114.1	2E-16	Serine/threonine protein kinase
Swissprot	tr\|P33543\|TMKL1_ARATH	6E-62	Putative kinase-like protein TMKL1 (Precursor)
trEMBL	tr\|A0A061G0A2\|A0A061G0A2_THECC	1E-167	Kinase superfamily protein, putative {ECO:0000313\|EMBL:EOY22798.1}
TAIR10	AT5G07620.1	4E-111	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	4579070	4581191	-
GWHAAZE00000008	mRNA	4579070	4581191	-
GWHAAZE00000008	exon	4579070	4579659	-
GWHAAZE00000008	exon	4580705	4581191	-
GWHAAZE00000008	CDS	4580705	4581191	-
GWHAAZE00000008	CDS	4579070	4579659	-

Transcript Sequence
>GWHTAAZE026465 ATGGAACACAAACACAAGCTCATACTAATTTTAGTACTACCCTCTTCATTTATCGTAATTCTTCTCCTCATTGTGATCTATTTGTGCCACAAAAGGGTGGCCAAACATGGGCCCAAAGACATAGAAGTTAGCTCTGATTATACAGAAGTAGATGAAATTGAGAGAGAGGAGTTGATCAGATTCGAAGGTGTTGAAGATCTTACTGTATTTGATATATTGGATGCTCCTGGTGAAGTAATTGGGAAATCTAGTTATGGGACTCTGTATAGAGCTAGTTTAATGAGGACTAATGCAGTTATGCTTTTGAGATTCTTAAGACCAACTTGCACAGGGAAGATTAGTGAAGTCGAGCCAGTGATTCAATTGTTGGGTTCAATTAGGCACCCAAATTTGGTGCCACTTTCAGCATTTTATGCAGGGCAAAGGGGTGAGAAGCTTTTGGTTCATCCATTCTATAGACGCGGCAATTTGGCTGAATTCATTCGAGATGGAAATGGTGAATCTCACAGATGGATCGTCATTAACAGAATATCTGCTGGGATCACCAGAGGTTTAGACCATCTTCACACGGGTCTGCAGACACCTGTAATCCATGGAAATCTCAAGTCCAAGAACATATTATTGGGTCGAAATTACCAACCCTATGTGTCAGATTTTGGCCTAAATCTCCTCTTGAATCCAACAGCCAGCCAAGAAATGCTTGAAGACTCTGCAGATGAGGGATACAAAGCCCCTGAGCTGATCAAAATGAAGGAAACAAGTGAAAAGACTGATATCTATAGCCTCGGAGTAATCTTTCTTGAATTACTAACAGGTAAGGAACCAATCAATGAGAAACCGGACCCTGATCAAGATTTTTATTTGCCAAACGCCATGAGGAATGCAATACTTGGTAATCGGATCATGGATTTGTGTCACCCAGATATTCTTATCCGCGAAAAGGATAGTCGAAGCCTGGTTACCGAAGAAGGTGTTCTCAAATTCATTCAGCTTGCAATGGCTTGTTGTTCTCCTTCGCCTTCTCTTAGGCCTGACGCAAAGCAAATCCTCAGAAAGCTTGAAGAAATCGGAGAGTAA

Network for GWHGAAZE026431

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	78	351	4.00E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.725
	SRR3591706	second leaf	5.931
	SRR3591707	mature leaf	2.937
	SRR3591708	Shoot apex	4.214
	SRR3591709	Stem	6.456
	SRR3591710	White floral bud	2.865
	SRR3591711	White flower	1.508
	SRR3591712	Green floral bud	3.653
	SRR3591713	Yellow flower	1.192
SRP173429	SRR8316895	Juvenile bud stage	1.854
	SRR8316896	Juvenile bud stage	2.158
	SRR8316897	Juvenile bud stage	0.287
	SRR8316894	Third green stage	1.713
	SRR8316900	Third green stage	2.788
	SRR8316901	Third green stage	2.220
	SRR8316898	Complete white stage	0.482
	SRR8316899	Complete white stage	2.854
	SRR8316903	Complete white stage	1.240
	SRR8316902	Silver flowering stage	0.152
	SRR8316904	Silver flowering stage	0.914
	SRR8316905	Silver flowering stage	0.152
	SRR8316906	Gold flowering stage	0.470
	SRR8316907	Gold flowering stage	0.233
	SRR8316908	Gold flowering stage	0.676
SRP132670	SRR6706286	Control	0.718
	SRR6706287	Light intensity 50%	1.574
	SRR6706288	Light intensity 20%	1.145
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.767
	CNS0095593	Slightly white alabastrum(diploid) 2	1.170
	CNS0095594	Slightly white alabastrum(diploid) 3	1.566
	CNS0095595	Whole white alabastrum(diploid) 2	1.881
	CNS0095596	Whole white alabastrum(diploid) 3	1.211
	CNS0095597	Whole white alabastrum(diploid) 4	0.719
	CNS0095598	Silvery flower (diploied) 1	1.122
	CNS0095599	Silvery flower (diploied) 2	0.638
	CNS0095600	Silvery flower (diploied) 3	0.854
	CNS0095601	Golden flower (diploid) 1	1.280
	CNS0095602	Golden flower (diploid) 2	1.153
	CNS0095603	Golden flower (diploid) 3	1.426
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.585
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.262
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.879
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.551
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.980
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.182
	CNS0095610	Silvery flower (tetraploid) 1	0.202
	CNS0095611	Silvery flower (tetraploid) 2	1.316
	CNS0095612	Silvery flower (tetraploid) 3	1.592
	CNS0095613	Golden flower (tetraploid) 1	0.342
	CNS0095614	Golden flower (tetraploid) 2	0.356
	CNS0095615	Golden flower (tetraploid) 3	1.150
CRA001975	CRR073297	Stem 1	2.105
	CRR073298	Stem 2	2.899
	CRR073299	Stem 3	2.284
	CRR073300	Leaf 1	2.663
	CRR073301	Leaf 2	2.296
	CRR073302	Leaf 3	1.112
	CRR073303	Juvenile bud 1	0.949
	CRR073304	Juvenile bud 2	1.028
	CRR073305	Juvenile bud 3	1.232
	CRR073306	Third green 1	0.275
	CRR073307	Third green 2	1.335
	CRR073308	Third green 3	0.257
	CRR073309	Second white 1	0.114
	CRR073310	Second white 2	0.295
	CRR073311	Second white 3	0.280
	CRR073312	Silver flowering 1	0.144
	CRR073313	Silver flowering 2	0.508
	CRR073314	Silver flowering 3	0.190
	CRR073315	Gold flowering 1	1.974
	CRR073316	Gold flowering 2	4.322
	CRR073317	Gold flowering 3	2.752
	CRR073318	Tawny withering 1	4.057
	CRR073319	Tawny withering 2	1.908
	CRR073320	Tawny withering 3	5.024