Gene detail

Detail information of GWHGAAZE026430

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN78862.1	0	hypothetical protein VITISV_021538 [Vitis vinifera]
COG	YP_006666835.1	2E-20	Serine/threonine protein kinase
Swissprot	tr\|Q9SW11\|PUB35_ARATH	0	Serine/threonine-protein kinase
trEMBL	tr\|A5BC94\|A5BC94_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN78862.1}
TAIR10	AT4G25160.1	0	U-box domain-containing protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	4569351	4575619	+
GWHAAZE00000008	mRNA	4569351	4575619	+
GWHAAZE00000008	exon	4569351	4569530	+
GWHAAZE00000008	exon	4570149	4570412	+
GWHAAZE00000008	exon	4570878	4570999	+
GWHAAZE00000008	exon	4571093	4571214	+
GWHAAZE00000008	exon	4571448	4571638	+
GWHAAZE00000008	exon	4572245	4572558	+
GWHAAZE00000008	exon	4572856	4572957	+
GWHAAZE00000008	exon	4573173	4573601	+
GWHAAZE00000008	exon	4574356	4575108	+
GWHAAZE00000008	exon	4575434	4575619	+
GWHAAZE00000008	five_prime_UTR	4569351	4569530	+
GWHAAZE00000008	five_prime_UTR	4570149	4570216	+
GWHAAZE00000008	CDS	4570217	4570412	+
GWHAAZE00000008	CDS	4570878	4570999	+
GWHAAZE00000008	CDS	4571093	4571214	+
GWHAAZE00000008	CDS	4571448	4571638	+
GWHAAZE00000008	CDS	4572245	4572558	+
GWHAAZE00000008	CDS	4572856	4572957	+
GWHAAZE00000008	CDS	4573173	4573601	+
GWHAAZE00000008	CDS	4574356	4575108	+
GWHAAZE00000008	CDS	4575434	4575619	+

Transcript Sequence
>GWHTAAZE026464 AGACTCAACGTCATCTCAATCGAATTTCTTCAAATTTTTCGAATTCCATTTATATAAACCTAGTCTGAATTGTTTCAGAGCTCTAAAGTTGAAGATATTTAAAATGGGTTTTTGCTTTTATTCTTCTTTCGCGGAGATCTAATGGAATTATTCTGGATTTGAAGCTGTTAATAGTTGCTGTAGTAAGTTCACATGTAAGCTTTAACCATGTTCTAGAGCATGCACTGCTAAAGAGAAGTTGCAAAGAAATGGAGAAGAATGGGGTAATTGAAGGCCTAAGAACGTTGCCACCTCCTGCACATTTGACTGTTGCAGTAGCTATTAATGGAGATAGAAAAAGTACAAAAATAGTCAAGTGGGCATTAGAGAACTTCATTCCAGAGGGAAAGAATTTTTTCAAGTTGTTACACGTCCGCCCTAAGATTACTGCAGTTCCAACACCTATGGGAAATTCAATTCCTCTTTCGCAAGTGCGAGATGACATAGCCACTGCTTTCAAACAGGAAGTGGAATGGCAAACCAATGAAAAGCTTATCCCTTACAAGAAGATGTGTGCTCAAAAAAAGGTTGAAGTAGAAATTGTACAAATTGAATCTGACAATGTAGTTAGTGCAATAGTGGGGGAGGTTGCTAATTGCACCATTAACAAACTTGTTATTGGAGCTTCATCCCGTAGCATATTTTCAAGGGGGCGAAGTTTGTCATCAAGAATCTCGGAGTGCACTCCAAACTTTTGTACAGTATATGCTGTTTCAAGAGGGAGACTGTCGTCTATACGCCCATCTGATTCAGAGACCATTGGAAGCATTAAAGATGACAGTAGTGACACCAGTTGTTCTACCACTGATTCACCGAGTTTCGCTTCCAGCTCACAAACAGAACGGACCGACATAGGCTCAGCCACTTCATACACTCATTTTCGTTCTCCTTCACTAGCGGAGCAGCGGTTTCAAGCTCTTTCAATGATCAACAAGACCCTTCTTCACAAAAGAAGCAGTTCGGTAGAAACTGGCCATTCTAGAACCCTGTCTGTGGATAATGGGGAAGGGGATGGTGTTTTGAATAGCCTCCGTAACTCGGACGTTTCTTATGCTAATAGTCAGGTTTCTAGTTTAAGAAGCTACAACCAAACATGGAGCTCTGATCAAGCTTCCACGTTAGATGAAACTACGTATTTTTCATCCGAAAATCAGGTCAATATCAATTTTGAGCTAGAAAAACTGAGAGTTGAACTCAGACATATTCGAGGAATGTACGCCGTCGCCCAAAGTGAGTCACTTGATGCTTCTAGGAAGCTAAAGGATATTCACAAGCGCCGAATAGATGAATCAATAAAACTTGAGGAGATAAACCTTAAGGAGGAGGAAGCAGAAAAACTAGCAAAAGAAGAGAAAGAGAGATATGAAGCTACAAAATCAGAAGCAGAATATGTGAAGGAATGTGTTGAAAGAGAAGCTGCACAAAGGAGAGTAGCAGAGACTAAAGCCTCAAGAGAGGCCAGAGAGAAAGAAAAGCTCGAGAACGCTTTGGTGGGGTCCGTGCCGCAGTACCAGAAGTTCACTTGGGAAGAAATCGTGTTTGCTACCTTGTCATTCTCAGAGAATCTTAAGATCGGAATGGGCGCGTATGGAACTGTTTACAAATGCAATTTGCACCACACCACTGCTGCAGTGAAAGTTCTTCACTCTAAGGAGGCACACAAGAACAAGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATCCGCCATCCCCATTTGCTAATTCTTCTTGGTGCATGTCCCGAAAACGGGTGCCTTGTTTATGAGTACATGGAGAATGGTAGCTTAGAGGACAGGCTATTCCGAAAGTATAATTCACCTCCAATACCATGGTTTGAGCGGTATAGAATCGCTTGGGAGGTAGCGTCGGCCCTCGTCTTCCTTCACAACACAAAGCCAGAACCGATCGTCCATCGTGATCTAAAACCAGGAAACATATTGCTCGACCACAATCTCGTGAGCAAGATCGGTGATGTCGGCCTTTCCACAATGATTCATTCCGACTCTTCAGTCATATCCACCATGTACAAGGACACGGGTCCTGTTGGAACTATGTGTTATATAGATCCCGAGTATCAAAGGACTGGGTTAATATCCCCAAAGTCCGACGTTTATGCTTTTGGGATGGTTATTTTGCAACTTTTGACCGGAAAACCGGCCATAGCCCTAGCCCACGTGGTGGAAACCGCCATTGATGAGGGCCACTTAGCTGAGGTACTGGACCCTGAGGCCGGTGAATGGCCAATTGAAGAGACAAATGAATTGGCTATATTAGGAGTAAAATGTGCAGAGCTTCGCCGTAGAGATAGGCCCGATTTAAAAGATCAAGTTCTACCGGCACTAGAGAGATTGAAACAGGTGGCTAATACAGCTCAAGATTTGGCTATGATGGCTCAACCGGCTGCTCCTAATCACTTCATATGCCCCATACTCAAGGATGTAATGGAAGATCCTTGTGTTGCTGCGGATGGGTACACTTACGATCGTAAGGCAATAGAGAAATGGTTGGAGGAGGAAAGTGATAAATCGCCAATGACAAATTTACCATTGCCAAGCAAGAATCTACTACCAAATTACACACTTCTTTCTGCAATTATAGAGTGGAAGTCCGGAAAGAAATGA

Network for GWHGAAZE026430

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	451	703	6.90E-40
PF04564.16	U-box	733	803	8.90E-19

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXb

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0016567	biological_process	protein ubiquitination
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004842	molecular_function	ubiquitin-protein transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.218
	SRR3591706	second leaf	5.214
	SRR3591707	mature leaf	9.644
	SRR3591708	Shoot apex	5.799
	SRR3591709	Stem	8.156
	SRR3591710	White floral bud	20.182
	SRR3591711	White flower	34.557
	SRR3591712	Green floral bud	12.328
	SRR3591713	Yellow flower	47.055
SRP173429	SRR8316895	Juvenile bud stage	6.657
	SRR8316896	Juvenile bud stage	8.677
	SRR8316897	Juvenile bud stage	2.162
	SRR8316894	Third green stage	3.211
	SRR8316900	Third green stage	7.981
	SRR8316901	Third green stage	7.109
	SRR8316898	Complete white stage	5.745
	SRR8316899	Complete white stage	9.461
	SRR8316903	Complete white stage	9.143
	SRR8316902	Silver flowering stage	10.220
	SRR8316904	Silver flowering stage	17.231
	SRR8316905	Silver flowering stage	8.009
	SRR8316906	Gold flowering stage	33.357
	SRR8316907	Gold flowering stage	30.060
	SRR8316908	Gold flowering stage	28.253
SRP132670	SRR6706286	Control	9.337
	SRR6706287	Light intensity 50%	9.559
	SRR6706288	Light intensity 20%	8.816
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.489
	CNS0095593	Slightly white alabastrum(diploid) 2	5.725
	CNS0095594	Slightly white alabastrum(diploid) 3	6.937
	CNS0095595	Whole white alabastrum(diploid) 2	4.463
	CNS0095596	Whole white alabastrum(diploid) 3	3.874
	CNS0095597	Whole white alabastrum(diploid) 4	4.517
	CNS0095598	Silvery flower (diploied) 1	15.621
	CNS0095599	Silvery flower (diploied) 2	14.575
	CNS0095600	Silvery flower (diploied) 3	32.155
	CNS0095601	Golden flower (diploid) 1	16.960
	CNS0095602	Golden flower (diploid) 2	33.271
	CNS0095603	Golden flower (diploid) 3	33.543
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.215
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.913
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.778
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.272
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.651
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.476
	CNS0095610	Silvery flower (tetraploid) 1	32.604
	CNS0095611	Silvery flower (tetraploid) 2	34.168
	CNS0095612	Silvery flower (tetraploid) 3	26.752
	CNS0095613	Golden flower (tetraploid) 1	26.091
	CNS0095614	Golden flower (tetraploid) 2	35.304
	CNS0095615	Golden flower (tetraploid) 3	54.204
CRA001975	CRR073297	Stem 1	12.499
	CRR073298	Stem 2	11.355
	CRR073299	Stem 3	11.664
	CRR073300	Leaf 1	9.001
	CRR073301	Leaf 2	9.093
	CRR073302	Leaf 3	6.375
	CRR073303	Juvenile bud 1	5.692
	CRR073304	Juvenile bud 2	4.780
	CRR073305	Juvenile bud 3	5.205
	CRR073306	Third green 1	10.005
	CRR073307	Third green 2	4.635
	CRR073308	Third green 3	8.595
	CRR073309	Second white 1	6.917
	CRR073310	Second white 2	16.212
	CRR073311	Second white 3	15.543
	CRR073312	Silver flowering 1	13.632
	CRR073313	Silver flowering 2	8.153
	CRR073314	Silver flowering 3	10.848
	CRR073315	Gold flowering 1	8.577
	CRR073316	Gold flowering 2	10.555
	CRR073317	Gold flowering 3	5.329
	CRR073318	Tawny withering 1	6.918
	CRR073319	Tawny withering 2	5.586
	CRR073320	Tawny withering 3	4.665