Gene detail

Detail information of GWHGAAZE026428

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN79229.1	4.3999E-115	hypothetical protein VITISV_027074 [Vitis vinifera]
Swissprot	tr\|Q8VZU9\|DERL1_ARATH	2E-80	Derlin-1
trEMBL	tr\|A5BR67\|A5BR67_VITVI	2E-115	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN79229.1}
TAIR10	AT4G29330.1	1E-65	DERLIN-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	4551299	4554710	+
GWHAAZE00000008	mRNA	4551299	4554710	+
GWHAAZE00000008	exon	4551299	4551314	+
GWHAAZE00000008	exon	4551824	4551897	+
GWHAAZE00000008	exon	4552092	4552165	+
GWHAAZE00000008	exon	4552502	4552595	+
GWHAAZE00000008	exon	4552703	4552831	+
GWHAAZE00000008	exon	4553904	4554064	+
GWHAAZE00000008	exon	4554494	4554710	+
GWHAAZE00000008	CDS	4551299	4551314	+
GWHAAZE00000008	CDS	4551824	4551897	+
GWHAAZE00000008	CDS	4552092	4552165	+
GWHAAZE00000008	CDS	4552502	4552595	+
GWHAAZE00000008	CDS	4552703	4552831	+
GWHAAZE00000008	CDS	4553904	4554064	+
GWHAAZE00000008	CDS	4554494	4554710	+

Transcript Sequence
>GWHTAAZE026462 ATGGAGGATGGGAGAGGGGCTTATCATCTCAATCTTTACAGTCCTCGAACTATCTCCATACGTTATTCTGAAGTGTTTAGACACTTTGAGATTTGGAGGCTTATTACAAATTTCTTTTTCATCGCGCCTTTTTCGCTCACATTTGGGATTCGCCTTTTGATAATATTAAGGAATGGAGTTTCATTAGAGAGGGGCCCTTTTGACAAGAGGACGGCAGATTACTTATGGATGTACATATTTGGAGCATTCTCATTGCTGGTGATGGCAGCTATTCCATTTCTATGGACTCCATTCTTGGGGCCTTCTTTGGTTTTTATGATTGTTTATGTTTGGGGCCGCGAATTCCCAAATGAGCGCGTAAATATCCACGGTCTTTTCGAATTGAAGGGTTTCTATCTTCCATGGTACATGCTTGCAGCAGATTTGATACTTGGCAATCCACTGAAGCCAGACATGCTTGGGATTGTTGCTGGACATTTGTTCTACTTCTTGACTGTGCTTTATCCTCTTTCTGGTGGCAAAAACTACTGCAAGACTCCTCTTTGGGTTCATAAGCTAGTAGCATTTTGGGGTGAGGGTTTCCAAGCAAACAGTCCGGTAAGGAAAGATGCCTCCGAAGGGGTGGCGTTCAGTGGAAGAAGCTTCCGTTTAAACGGCAGTAGAGCTACCCGTTCTCGGCAAGACCAATCCGATACTCCGGTACAAGCCAATGCCGCTCCTGGAGGAGCTTTTAGTGGGAAAAGCCGTCGTTTGAATGGTCGTTAG

Network for GWHGAAZE026428

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04511.16	DER1	8	180	2.80E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13989	DERL2_3	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.190
	SRR3591706	second leaf	4.095
	SRR3591707	mature leaf	12.981
	SRR3591708	Shoot apex	1.888
	SRR3591709	Stem	15.381
	SRR3591710	White floral bud	8.266
	SRR3591711	White flower	15.575
	SRR3591712	Green floral bud	11.719
	SRR3591713	Yellow flower	2.700
SRP173429	SRR8316895	Juvenile bud stage	8.020
	SRR8316896	Juvenile bud stage	14.169
	SRR8316897	Juvenile bud stage	3.554
	SRR8316894	Third green stage	2.366
	SRR8316900	Third green stage	6.970
	SRR8316901	Third green stage	6.609
	SRR8316898	Complete white stage	3.665
	SRR8316899	Complete white stage	38.876
	SRR8316903	Complete white stage	7.019
	SRR8316902	Silver flowering stage	2.908
	SRR8316904	Silver flowering stage	2.379
	SRR8316905	Silver flowering stage	1.852
	SRR8316906	Gold flowering stage	3.623
	SRR8316907	Gold flowering stage	4.506
	SRR8316908	Gold flowering stage	4.786
SRP132670	SRR6706286	Control	22.075
	SRR6706287	Light intensity 50%	16.528
	SRR6706288	Light intensity 20%	12.833
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.119
	CNS0095593	Slightly white alabastrum(diploid) 2	12.956
	CNS0095594	Slightly white alabastrum(diploid) 3	14.737
	CNS0095595	Whole white alabastrum(diploid) 2	11.235
	CNS0095596	Whole white alabastrum(diploid) 3	6.256
	CNS0095597	Whole white alabastrum(diploid) 4	10.836
	CNS0095598	Silvery flower (diploied) 1	33.234
	CNS0095599	Silvery flower (diploied) 2	28.949
	CNS0095600	Silvery flower (diploied) 3	10.204
	CNS0095601	Golden flower (diploid) 1	41.653
	CNS0095602	Golden flower (diploid) 2	16.753
	CNS0095603	Golden flower (diploid) 3	16.984
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.968
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.453
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.969
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.666
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.626
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.967
	CNS0095610	Silvery flower (tetraploid) 1	1.775
	CNS0095611	Silvery flower (tetraploid) 2	3.433
	CNS0095612	Silvery flower (tetraploid) 3	2.123
	CNS0095613	Golden flower (tetraploid) 1	0.893
	CNS0095614	Golden flower (tetraploid) 2	3.442
	CNS0095615	Golden flower (tetraploid) 3	0.353
CRA001975	CRR073297	Stem 1	4.118
	CRR073298	Stem 2	5.108
	CRR073299	Stem 3	1.498
	CRR073300	Leaf 1	2.178
	CRR073301	Leaf 2	4.844
	CRR073302	Leaf 3	1.255
	CRR073303	Juvenile bud 1	0.272
	CRR073304	Juvenile bud 2	1.175
	CRR073305	Juvenile bud 3	1.507
	CRR073306	Third green 1	0.663
	CRR073307	Third green 2	0.271
	CRR073308	Third green 3	1.034
	CRR073309	Second white 1	0.138
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.043
	CRR073313	Silver flowering 2	0.076
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	17.361
	CRR073316	Gold flowering 2	23.689
	CRR073317	Gold flowering 3	24.063
	CRR073318	Tawny withering 1	14.297
	CRR073319	Tawny withering 2	15.713
	CRR073320	Tawny withering 3	6.876