Gene detail

Detail information of GWHGAAZE026424

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002268950.1	0	PREDICTED: 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform X1 [Vitis vinifera]
COG	YP_006297445.1	5E-61	8-amino-7-oxononanoate synthase
Swissprot	tr\|Q8RYL1\|LCB2B_ORYSJ	1E-19	Long chain base biosynthesis protein 2b
trEMBL	tr\|D7TZC6\|D7TZC6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36440.3}
TAIR10	AT5G04620.2	2E-158	biotin F

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	4491280	4497844	+
GWHAAZE00000008	mRNA	4491280	4497844	+
GWHAAZE00000008	exon	4491280	4491589	+
GWHAAZE00000008	exon	4492215	4492360	+
GWHAAZE00000008	exon	4492462	4492569	+
GWHAAZE00000008	exon	4493828	4494045	+
GWHAAZE00000008	exon	4494853	4494894	+
GWHAAZE00000008	exon	4495645	4495732	+
GWHAAZE00000008	exon	4496269	4496402	+
GWHAAZE00000008	exon	4497002	4497090	+
GWHAAZE00000008	exon	4497510	4497844	+
GWHAAZE00000008	five_prime_UTR	4491280	4491336	+
GWHAAZE00000008	CDS	4491337	4491589	+
GWHAAZE00000008	CDS	4492215	4492360	+
GWHAAZE00000008	CDS	4492462	4492569	+
GWHAAZE00000008	CDS	4493828	4494045	+
GWHAAZE00000008	CDS	4494853	4494894	+
GWHAAZE00000008	CDS	4495645	4495732	+
GWHAAZE00000008	CDS	4496269	4496402	+
GWHAAZE00000008	CDS	4497002	4497090	+
GWHAAZE00000008	CDS	4497510	4497844	+

Transcript Sequence
>GWHTAAZE026458 ATTGGTAGCTCCAACTGAGATTTCTCGCACATTCTCTCAATACATCTCCTTTTATAAATGGAGACGAGCTCGTGGGATTACTGGGTAGAGCAGGCACTTTCGAGGTTGGTTTCTTTGAAACTAATCCGATCCCTCAGACCCATTCACTTATCCCACAACCATAAATCCACTCCAATTGAACCGAATAATGCTCATAATTTGGATGAGTACCAGGTGTTCGACGAATTGCGGGAATGGGATAGAGCTTCTGTGGAAGTAGAGATTGCCGAGTCCACATTTCAGAGATGGGTCCAAGACATACCCAGTTCTGGAGATGATCTTGTATTCAGTGATGGAGAAGAAGCTGATAATAAAGTAGGAGAATTCCCTAAGAAGTTCAAAAAGCTACTTTTATTCTCTGGAAATGATTATCTGGGGTTAAGTTCACATCCTGCGGTTGCCAAGGCTGCTGCAAAGGCAGTCCAAGAACATGGAATGGGCCCTAGAGGTTCTGCTCTAATATGTGGGTATACGAATTACCATAGGCTACTAGAGTCTTGCCTGGCAGACTTAAAAAAGAAAGAGGATTGCCTTCTTTGTCCCACAGGCTTTTCAGCCAATATGGCCTTCATGACAGCAGTAGGAAATGTTAGCTCTCTCTTATCTGCTGATGAAAAACCTTTGAAAGACAAAAGCATTGCCATATTTTCCGATGCTCTGAACCATGCATCAATAATTGATGGTATCCGTCTTGCTGAGCGACAACGAAGTGTGCAAGTTTTTGTCTATCGGCACTGTGATATATCAAATTGCACAGTGAAGAAGAAAATTGTTGTCACTGACAGCTTGTTTAGCATGGATGGAGACTTTGCACCAATGACTGAGCTTGTGAAGCTTCGTAAGAAGCATGGATTTTTATTGGTGATCGACGATGCTCATGGAACATTTGTTTGTGGCAAAAATGGTGGGGGTGTGGCCGAAGAGTTTAATTGTGAAACTGATGTTGACATATGCATAGGCACTTTGAGTAAGGCTGCTGGATGCCATGGTGGATTTATAGCATGCAGCAAAAGGTGGAAGCAACTGATACAATCAAGGGGTCGTGCTTTTATATTCTCAACTTCTACACCGGTGCCTGTTGCTGCTGCTGCTCATGCTGCTGTTATGGTGGCCAAAAAGGAGAAATGGCGTAGAAGGGCTATTTGGAATCGGGTGTTAGACTTTCGTGCTCTCACTGGAATCCCCATTACAAGTCCCATCATTTCCCTTATTGTAGGGAGTGAAGAGAAGTCCCTCCAAGCTAGCCGGTATGTTCCTCCACTATCTGTGTGTGTGTGTTTTCTTCAGCTGATCTTAACATGTCTTATATCATTGGACAGATATCTGTTGAGATCGGGTTTCCACGTAAGCGCAATCAGACCCCCGACAGTGCCCCCTAACTTATGCAGGTTCTCTCTCCCTCTCTCTCTCTCTGTCCCTTCATTTGGATGA

Network for GWHGAAZE026424

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.22	Aminotran_1_2	109	460	3.50E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00652	bioF	Metabolic pathways	map01100
K00652	bioF	Biotin metabolism	map00780

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.737
	SRR3591706	second leaf	9.903
	SRR3591707	mature leaf	5.302
	SRR3591708	Shoot apex	18.025
	SRR3591709	Stem	4.740
	SRR3591710	White floral bud	8.102
	SRR3591711	White flower	6.030
	SRR3591712	Green floral bud	14.764
	SRR3591713	Yellow flower	5.020
SRP173429	SRR8316895	Juvenile bud stage	12.877
	SRR8316896	Juvenile bud stage	18.579
	SRR8316897	Juvenile bud stage	8.367
	SRR8316894	Third green stage	7.325
	SRR8316900	Third green stage	17.585
	SRR8316901	Third green stage	18.054
	SRR8316898	Complete white stage	4.817
	SRR8316899	Complete white stage	17.677
	SRR8316903	Complete white stage	5.133
	SRR8316902	Silver flowering stage	3.222
	SRR8316904	Silver flowering stage	3.556
	SRR8316905	Silver flowering stage	1.359
	SRR8316906	Gold flowering stage	7.496
	SRR8316907	Gold flowering stage	5.684
	SRR8316908	Gold flowering stage	9.130
SRP132670	SRR6706286	Control	14.800
	SRR6706287	Light intensity 50%	17.412
	SRR6706288	Light intensity 20%	19.069
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.915
	CNS0095593	Slightly white alabastrum(diploid) 2	13.195
	CNS0095594	Slightly white alabastrum(diploid) 3	14.165
	CNS0095595	Whole white alabastrum(diploid) 2	12.187
	CNS0095596	Whole white alabastrum(diploid) 3	15.895
	CNS0095597	Whole white alabastrum(diploid) 4	11.564
	CNS0095598	Silvery flower (diploied) 1	9.289
	CNS0095599	Silvery flower (diploied) 2	8.684
	CNS0095600	Silvery flower (diploied) 3	5.954
	CNS0095601	Golden flower (diploid) 1	10.705
	CNS0095602	Golden flower (diploid) 2	7.557
	CNS0095603	Golden flower (diploid) 3	6.321
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.455
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.816
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.678
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.989
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.107
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.981
	CNS0095610	Silvery flower (tetraploid) 1	8.608
	CNS0095611	Silvery flower (tetraploid) 2	7.505
	CNS0095612	Silvery flower (tetraploid) 3	9.590
	CNS0095613	Golden flower (tetraploid) 1	4.597
	CNS0095614	Golden flower (tetraploid) 2	8.352
	CNS0095615	Golden flower (tetraploid) 3	1.914
CRA001975	CRR073297	Stem 1	20.227
	CRR073298	Stem 2	15.725
	CRR073299	Stem 3	13.281
	CRR073300	Leaf 1	16.258
	CRR073301	Leaf 2	16.701
	CRR073302	Leaf 3	14.193
	CRR073303	Juvenile bud 1	12.326
	CRR073304	Juvenile bud 2	10.224
	CRR073305	Juvenile bud 3	9.455
	CRR073306	Third green 1	5.111
	CRR073307	Third green 2	3.050
	CRR073308	Third green 3	4.061
	CRR073309	Second white 1	2.308
	CRR073310	Second white 2	2.300
	CRR073311	Second white 3	2.986
	CRR073312	Silver flowering 1	3.534
	CRR073313	Silver flowering 2	3.882
	CRR073314	Silver flowering 3	2.792
	CRR073315	Gold flowering 1	9.273
	CRR073316	Gold flowering 2	14.382
	CRR073317	Gold flowering 3	5.515
	CRR073318	Tawny withering 1	14.520
	CRR073319	Tawny withering 2	9.533
	CRR073320	Tawny withering 3	9.384