Detail information of GWHGAAZE026421


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002301250.16.1456E-13960S ribosomal protein L15 [Populus trichocarpa]
COGYP_004576948.17E-5450S ribosomal protein L15e
Swissprottr|O82528|RL15_PETHY5E-13560S ribosomal protein L15
trEMBLtr|B9GPA1|B9GPA1_POPTR2E-139Ribosomal protein L15 {ECO:0000256|RuleBase:RU000663}
TAIR10AT4G16720.19E-89Ribosomal protein L23/L15e family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene44398274442926-
GWHAAZE00000008mRNA44398274442926-
GWHAAZE00000008exon44398274440338-
GWHAAZE00000008exon44416634441860-
GWHAAZE00000008exon44427474442926-
GWHAAZE00000008CDS44427474442926-
GWHAAZE00000008CDS44416634441860-
GWHAAZE00000008CDS44400904440338-
GWHAAZE00000008three_prime_UTR44398274440089-
Transcript Sequence

Network for GWHGAAZE026421

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00827.18Ribosomal_L15e51941.60E-89
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02877RP-L15e, RPL15 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf99.408
SRR3591706second leaf44.803
SRR3591707mature leaf8.569
SRR3591708Shoot apex158.353
SRR3591709Stem32.778
SRR3591710White floral bud29.568
SRR3591711White flower25.375
SRR3591712Green floral bud71.207
SRR3591713Yellow flower14.666
SRP173429 SRR8316895Juvenile bud stage 68.211
SRR8316896Juvenile bud stage 90.859
SRR8316897Juvenile bud stage 39.520
SRR8316894Third green stage 33.134
SRR8316900Third green stage 102.732
SRR8316901Third green stage 92.896
SRR8316898Complete white stage 9.336
SRR8316899Complete white stage 64.888
SRR8316903Complete white stage 12.934
SRR8316902Silver flowering stage4.625
SRR8316904Silver flowering stage4.977
SRR8316905Silver flowering stage2.676
SRR8316906Gold flowering stage 9.401
SRR8316907Gold flowering stage 8.872
SRR8316908Gold flowering stage 13.815
SRP132670SRR6706286Control102.019
SRR6706287Light intensity 50%100.629
SRR6706288Light intensity 20%110.367
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1139.162
CNS0095593Slightly white alabastrum(diploid) 2162.156
CNS0095594Slightly white alabastrum(diploid) 3145.113
CNS0095595Whole white alabastrum(diploid) 2112.343
CNS0095596Whole white alabastrum(diploid) 3148.534
CNS0095597Whole white alabastrum(diploid) 484.382
CNS0095598Silvery flower (diploied) 154.914
CNS0095599Silvery flower (diploied) 241.757
CNS0095600Silvery flower (diploied) 321.471
CNS0095601Golden flower (diploid) 141.262
CNS0095602Golden flower (diploid) 228.875
CNS0095603Golden flower (diploid) 328.309
CNS0095604Slightly white alabastrum(tetraploid) 1121.250
CNS0095605Slightly white alabastrum(tetraploid) 2132.218
CNS0095606Slightly white alabastrum(tetraploid) 3150.322
CNS0095607Whole white alabastrum(tetraploid) 171.342
CNS0095608Whole white alabastrum(tetraploid) 263.089
CNS0095609Whole white alabastrum(tetraploid) 3115.442
CNS0095610Silvery flower (tetraploid) 117.871
CNS0095611Silvery flower (tetraploid) 218.925
CNS0095612Silvery flower (tetraploid) 39.514
CNS0095613Golden flower (tetraploid) 16.706
CNS0095614Golden flower (tetraploid) 216.751
CNS0095615Golden flower (tetraploid) 34.778
CRA001975CRR073297Stem 189.572
CRR073298Stem 289.835
CRR073299Stem 3123.280
CRR073300Leaf 177.516
CRR073301Leaf 287.243
CRR073302Leaf 3131.155
CRR073303Juvenile bud 176.147
CRR073304Juvenile bud 245.253
CRR073305Juvenile bud 364.115
CRR073306Third green 13.426
CRR073307Third green 22.698
CRR073308Third green 34.390
CRR073309Second white 13.448
CRR073310Second white 21.525
CRR073311Second white 32.070
CRR073312Silver flowering 13.101
CRR073313Silver flowering 27.409
CRR073314Silver flowering 31.248
CRR073315Gold flowering 124.235
CRR073316Gold flowering 222.253
CRR073317Gold flowering 320.600
CRR073318Tawny withering 174.963
CRR073319Tawny withering 265.554
CRR073320Tawny withering 382.343