Detail information of GWHGAAZE026394


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007038447.10Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
COGYP_004775215.13E-30RHS repeat-associated core domain-containing protein
Swissprottr|Q8RY65|NIK2_ARATH4E-76Protein NSP-INTERACTING KINASE 2 (Precursor)
trEMBLtr|A0A061G0M4|A0A061G0M4_THECC0Leucine-rich repeat protein kinase family protein isoform 1 {ECO:0000313|EMBL:EOY22948.1}
TAIR10AT5G51560.10Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene38514323855765-
GWHAAZE00000008mRNA38514323855765-
GWHAAZE00000008exon38554293855765-
GWHAAZE00000008exon38543183854578-
GWHAAZE00000008exon38531143853977-
GWHAAZE00000008exon38514323851913-
GWHAAZE00000008CDS38554293855765-
GWHAAZE00000008CDS38543183854578-
GWHAAZE00000008CDS38531143853977-
GWHAAZE00000008CDS38514323851913-
Transcript Sequence

Network for GWHGAAZE026394

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13855.7LRR_81341939.80E-07
PF07714.18PK_Tyr_Ser-Thr3766402.80E-42
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-IV

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE026394.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 300.511.522.533.544.555.566.577.58Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.187
SRR3591706second leaf3.507
SRR3591707mature leaf1.508
SRR3591708Shoot apex7.290
SRR3591709Stem0.492
SRR3591710White floral bud0.461
SRR3591711White flower0.612
SRR3591712Green floral bud0.477
SRR3591713Yellow flower0.079
SRP173429 SRR8316895Juvenile bud stage 0.143
SRR8316896Juvenile bud stage 0.405
SRR8316897Juvenile bud stage 0.287
SRR8316894Third green stage 0.378
SRR8316900Third green stage 0.655
SRR8316901Third green stage 0.399
SRR8316898Complete white stage 0.287
SRR8316899Complete white stage 0.704
SRR8316903Complete white stage 0.946
SRR8316902Silver flowering stage0.498
SRR8316904Silver flowering stage0.301
SRR8316905Silver flowering stage0.141
SRR8316906Gold flowering stage 1.077
SRR8316907Gold flowering stage 0.349
SRR8316908Gold flowering stage 0.464
SRP132670SRR6706286Control0.578
SRR6706287Light intensity 50%0.518
SRR6706288Light intensity 20%0.543
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.348
CNS0095593Slightly white alabastrum(diploid) 20.432
CNS0095594Slightly white alabastrum(diploid) 30.292
CNS0095595Whole white alabastrum(diploid) 20.152
CNS0095596Whole white alabastrum(diploid) 30.164
CNS0095597Whole white alabastrum(diploid) 40.254
CNS0095598Silvery flower (diploied) 10.904
CNS0095599Silvery flower (diploied) 20.770
CNS0095600Silvery flower (diploied) 30.770
CNS0095601Golden flower (diploid) 10.683
CNS0095602Golden flower (diploid) 20.589
CNS0095603Golden flower (diploid) 30.805
CNS0095604Slightly white alabastrum(tetraploid) 10.619
CNS0095605Slightly white alabastrum(tetraploid) 20.672
CNS0095606Slightly white alabastrum(tetraploid) 30.647
CNS0095607Whole white alabastrum(tetraploid) 10.402
CNS0095608Whole white alabastrum(tetraploid) 20.106
CNS0095609Whole white alabastrum(tetraploid) 30.165
CNS0095610Silvery flower (tetraploid) 10.301
CNS0095611Silvery flower (tetraploid) 20.626
CNS0095612Silvery flower (tetraploid) 30.280
CNS0095613Golden flower (tetraploid) 10.201
CNS0095614Golden flower (tetraploid) 20.635
CNS0095615Golden flower (tetraploid) 30.465
CRA001975CRR073297Stem 10.447
CRR073298Stem 20.639
CRR073299Stem 30.242
CRR073300Leaf 10.952
CRR073301Leaf 20.435
CRR073302Leaf 30.472
CRR073303Juvenile bud 10.358
CRR073304Juvenile bud 20.586
CRR073305Juvenile bud 30.936
CRR073306Third green 10.362
CRR073307Third green 20.088
CRR073308Third green 30.267
CRR073309Second white 10.114
CRR073310Second white 20.067
CRR073311Second white 30.032
CRR073312Silver flowering 10.453
CRR073313Silver flowering 20.144
CRR073314Silver flowering 30.130
CRR073315Gold flowering 10.506
CRR073316Gold flowering 21.167
CRR073317Gold flowering 30.393
CRR073318Tawny withering 10.652
CRR073319Tawny withering 20.549
CRR073320Tawny withering 30.356