Gene detail

Detail information of GWHGAAZE026368

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP22363.1	1.8647E-133	hypothetical protein JCGZ_26194 [Jatropha curcas]
COG	YP_003709340.1	3E-11	serine/threonine PP2C protein phosphatase
Swissprot	tr\|Q9FLI3\|P2C75_ARATH	2E-99	Probable protein phosphatase 2C 75
trEMBL	tr\|A0A067JHU3\|A0A067JHU3_JATCU	7E-134	Uncharacterized protein {ECO:0000313\|EMBL:KDP22363.1}
TAIR10	AT5G51760.1	3E-68	Protein phosphatase 2C family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	3446227	3453123	-
GWHAAZE00000008	mRNA	3446227	3453123	-
GWHAAZE00000008	exon	3446227	3446594	-
GWHAAZE00000008	exon	3449455	3449560	-
GWHAAZE00000008	exon	3452065	3452373	-
GWHAAZE00000008	exon	3452722	3453123	-
GWHAAZE00000008	CDS	3452722	3453123	-
GWHAAZE00000008	CDS	3452065	3452373	-
GWHAAZE00000008	CDS	3449455	3449560	-
GWHAAZE00000008	CDS	3446227	3446594	-

Transcript Sequence
>GWHTAAZE026402 ATGATAAATGACGAGGATGACACGCCGGCGAAATGCAAGGAGCGTCGACGGCGGAGGATCCAGATGAGGAGATTTGCCTCGGTGTCTATATCAGATTCATCTTCATCGCACAATCAAACTTTACTTTTTAACCAGAAAAAAGAGAGATCGGAGAGTAAATTAGTTCCTGTCGCCGGCGTGACTAGTAAAGCTATTTCGTTGTCGTCCGGCGAAGACAAGATGGCTGTGAATTTGAGTGGTGTTAGTTCCGAAACGCCGGTGTTCGGAGTGATGTCCGTCGCCGGTAGGCTGCGTGATATGGAGGACGCGATTACTGTACGGACTGACCTTTGCCGGCCGGCGATTAACCTGAGCCGGACGGTTCATTTCTTCGGCGTTTACGATGGACATGGCGGGCCTCACGTGGCTGCGCTTTGCAGGGAGAGGATGCATGTGATAATGGAGGAAGAGTTGATGCGCGTGAACATCGCGGGAACCAGTGAGAGTAGTGGTAGCAGCTCGAGGCAAGCAAGGGAGGATGGGTGGAGGAGAGCCTTAAGGAGGACCTTCATGAGGATGGACGAGGTGGCCCTTCGCACGTGCGCCTGCGGTGGCTCTGGGGGTGCTTGCACGTGCCACCCAATGGAGTTGGCTCTCGCTGGGTCCACCGCCGTTGTGGCCATTATGACGCAGGAATCCATCATTGTTGCTAACTGCGGCGACTCACGCGCCCCTGACAGAGTAGATGAACTTGCAAGGATTGAAGCTAGTGGGGGTAAAGTCATCTTTCTAAATGGTGCCAGAGTGGAAGGAATGCTTGCCATGTCCCGAGCAATAGGGGACAAGCTTCTAAAACCAGTTGTCACGGCAGAGCCTGAGATTTCATTCACGAGGCGAGACCAAGAAGACGAGTGCTTGATTATAGCAAGTGACGGTCTATGGGATGTTCTTTCAAATGAAATGGCTTGTGAGGTGGCTCACGAGTGCCTTCTTGAGAGTGACCCTCCAGTCCTCGGTGGATCCATCATTGAGATGGTGAACCCTGAGCCTCGTATAGAAGTTGACGGGGCCAATGGGGCAGTCTACTCAACCCGGAGCACGTGTGCCGCAGCGCTGCTAACGCGGCTTGCGTTGGGACGGAATAGCTCGGACAATATTAGCGTAATAGTCGTCGATTTGAAGAGCGAGCTAGAAAGAGGGAGATAA

Network for GWHGAAZE026368

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	88	237	5.90E-14
PF00481.22	PP2C	238	325	2.90E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14497	PP2C	MAPK signaling pathway - plant	map04016
K14497	PP2C	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.386
	SRR3591706	second leaf	3.549
	SRR3591707	mature leaf	1.781
	SRR3591708	Shoot apex	10.487
	SRR3591709	Stem	17.282
	SRR3591710	White floral bud	13.897
	SRR3591711	White flower	39.941
	SRR3591712	Green floral bud	20.240
	SRR3591713	Yellow flower	62.338
SRP173429	SRR8316895	Juvenile bud stage	19.568
	SRR8316896	Juvenile bud stage	31.776
	SRR8316897	Juvenile bud stage	34.889
	SRR8316894	Third green stage	5.395
	SRR8316900	Third green stage	15.979
	SRR8316901	Third green stage	21.461
	SRR8316898	Complete white stage	11.274
	SRR8316899	Complete white stage	32.406
	SRR8316903	Complete white stage	11.566
	SRR8316902	Silver flowering stage	18.896
	SRR8316904	Silver flowering stage	20.943
	SRR8316905	Silver flowering stage	14.719
	SRR8316906	Gold flowering stage	59.426
	SRR8316907	Gold flowering stage	44.923
	SRR8316908	Gold flowering stage	64.187
SRP132670	SRR6706286	Control	31.345
	SRR6706287	Light intensity 50%	29.752
	SRR6706288	Light intensity 20%	30.017
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.676
	CNS0095593	Slightly white alabastrum(diploid) 2	18.555
	CNS0095594	Slightly white alabastrum(diploid) 3	26.193
	CNS0095595	Whole white alabastrum(diploid) 2	14.349
	CNS0095596	Whole white alabastrum(diploid) 3	12.930
	CNS0095597	Whole white alabastrum(diploid) 4	18.393
	CNS0095598	Silvery flower (diploied) 1	19.880
	CNS0095599	Silvery flower (diploied) 2	37.099
	CNS0095600	Silvery flower (diploied) 3	42.616
	CNS0095601	Golden flower (diploid) 1	45.951
	CNS0095602	Golden flower (diploid) 2	51.559
	CNS0095603	Golden flower (diploid) 3	53.307
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.348
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.137
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.706
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.636
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.367
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.858
	CNS0095610	Silvery flower (tetraploid) 1	24.737
	CNS0095611	Silvery flower (tetraploid) 2	19.011
	CNS0095612	Silvery flower (tetraploid) 3	7.808
	CNS0095613	Golden flower (tetraploid) 1	25.364
	CNS0095614	Golden flower (tetraploid) 2	30.217
	CNS0095615	Golden flower (tetraploid) 3	80.758
CRA001975	CRR073297	Stem 1	9.410
	CRR073298	Stem 2	10.530
	CRR073299	Stem 3	10.080
	CRR073300	Leaf 1	13.607
	CRR073301	Leaf 2	14.886
	CRR073302	Leaf 3	10.836
	CRR073303	Juvenile bud 1	15.919
	CRR073304	Juvenile bud 2	7.699
	CRR073305	Juvenile bud 3	9.459
	CRR073306	Third green 1	21.758
	CRR073307	Third green 2	17.599
	CRR073308	Third green 3	23.320
	CRR073309	Second white 1	12.184
	CRR073310	Second white 2	16.604
	CRR073311	Second white 3	13.042
	CRR073312	Silver flowering 1	22.890
	CRR073313	Silver flowering 2	20.890
	CRR073314	Silver flowering 3	21.708
	CRR073315	Gold flowering 1	1.122
	CRR073316	Gold flowering 2	0.547
	CRR073317	Gold flowering 3	1.384
	CRR073318	Tawny withering 1	38.709
	CRR073319	Tawny withering 2	37.553
	CRR073320	Tawny withering 3	42.107