Gene detail

Detail information of GWHGAAZE026367

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011041653.1	0	PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 isoform X1 [Populus euphratica]
COG	YP_004958337.1	5E-21	secreted protein
Swissprot	tr\|Q9LSC2\|Y3589_ARATH	5E-101	PTI1-like tyrosine-protein kinase At3g15890
trEMBL	tr\|B9R9K2\|B9R9K2_RICCO	0	Serine-threonine protein kinase, plant-type, putative {ECO:0000313\|EMBL:EEF51479.1}
TAIR10	AT1G52540.1	2E-85	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	3433571	3442365	-
GWHAAZE00000008	mRNA	3433571	3442365	-
GWHAAZE00000008	exon	3442307	3442365	-
GWHAAZE00000008	exon	3436521	3436695	-
GWHAAZE00000008	exon	3435435	3435700	-
GWHAAZE00000008	exon	3433571	3434117	-
GWHAAZE00000008	CDS	3442307	3442365	-
GWHAAZE00000008	CDS	3436521	3436695	-
GWHAAZE00000008	CDS	3435435	3435700	-
GWHAAZE00000008	CDS	3433571	3434117	-

Transcript Sequence
>GWHTAAZE026401 ATGTGCCATGCATTAACATCAATAGCTGTGGAAGATGGAGGAGTTGAACAGAGAATAGGTGGTGGCAGTGGTAATAATGTTCATAAGAAGAGTACTAGCAGTAGGGAATATCCATGGGAAATATACAAACTGAAGGAGCTGATTCATGCAACAAACAATTTCCATATCGACAACAAGATTGGTGAAGGTGGCTTTGGAAGTGTTTATTGGGGTCGTACTTCTACTGGCGCTGAGATAGCAGTGAAAAGGCTAAAGGCAATGAGTGGAAAAGCAGAGATGGAATTTGCAGTGGAAGTAGAAATTCTGGGGAGGGTGAAGCACATTAATCTGTTGGGATTGAGGGGTTTTTATGCTGGTGGAGATGAGAGGCTTATAGTCTATGATTATATGCCCAATCACAGCTTGACAACTCACCTTCATGGCAAACTTTCTGCTGTTGATTGCCTTTTAGATTGGAGCAAAAGAATGAGCATTGCCATTGGTTCTGCCGAGGGAATAGGGTACTTGCACCATAAAGTGAGTCCACACATAATACACAGAGACATCAAAGCAAGCAATGTCCTCTTAGATTCACAATTCAAACCGAAAGTGGCTGATTTCGGCTTCGCAAGGCTAATACCTAACGGAGTTAGTCATTTAACAACAAGAGTGAAGGGCACATTAGGCTACTTAGCCCCCGAATACGCCATGTGGGGAAAAGTATCTGAAAATTGTGACGTTTACAGCTTCGGAATATTACTTCTAGAAATAATTAGCGCAAAAAAGCCCATAGAGAAGCTTCCGGCTGGTGTAAAGCGCGATATAGTCCAATGGGCTGGCCCTTATATTCAAAGGGGTGCTTTTGATTATATCGCGGACCCTAGGTTAAAGGGTAAGTTTGATAGAGTGCAGTTGGGAGTGGCAGTTATGGTGGCAATGAGGTGTACGGATAGTAATGCGGAGAATAGGCCTAGTATGGTGGAGGTGGTGGAGTGGCTAAAGGGTGGTTTTGTTGGAAGGAGGAAGAGAGAAATGGTGGTAGTGAGAGATGGTGATTATGAAAATAAA

Network for GWHGAAZE026367

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	54	259	5.40E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.214
	SRR3591711	White flower	0.326
	SRR3591712	Green floral bud	0.240
	SRR3591713	Yellow flower	0.624
SRP173429	SRR8316895	Juvenile bud stage	0.098
	SRR8316896	Juvenile bud stage	0.079
	SRR8316897	Juvenile bud stage	0.374
	SRR8316894	Third green stage	0.065
	SRR8316900	Third green stage	0.135
	SRR8316901	Third green stage	0.101
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.054
	SRR8316904	Silver flowering stage	0.191
	SRR8316905	Silver flowering stage	0.050
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.024
	SRR6706287	Light intensity 50%	0.073
	SRR6706288	Light intensity 20%	0.072
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.429
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.399
	CNS0095595	Whole white alabastrum(diploid) 2	0.005
	CNS0095596	Whole white alabastrum(diploid) 3	0.091
	CNS0095597	Whole white alabastrum(diploid) 4	0.457
	CNS0095598	Silvery flower (diploied) 1	0.220
	CNS0095599	Silvery flower (diploied) 2	0.107
	CNS0095600	Silvery flower (diploied) 3	0.017
	CNS0095601	Golden flower (diploid) 1	0.082
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.096
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.033
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.087
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.260
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.124
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.140
	CNS0095612	Silvery flower (tetraploid) 3	0.549
	CNS0095613	Golden flower (tetraploid) 1	0.023
	CNS0095614	Golden flower (tetraploid) 2	0.039
	CNS0095615	Golden flower (tetraploid) 3	0.078
CRA001975	CRR073297	Stem 1	0.517
	CRR073298	Stem 2	0.335
	CRR073299	Stem 3	0.220
	CRR073300	Leaf 1	0.310
	CRR073301	Leaf 2	0.021
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.140
	CRR073304	Juvenile bud 2	0.224
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.415
	CRR073307	Third green 2	0.206
	CRR073308	Third green 3	0.375
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.015
	CRR073311	Second white 3	0.052
	CRR073312	Silver flowering 1	0.156
	CRR073313	Silver flowering 2	0.122
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.471
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.241
	CRR073318	Tawny withering 1	0.331
	CRR073319	Tawny withering 2	0.357
	CRR073320	Tawny withering 3	0.342