Gene detail

Detail information of GWHGAAZE026345

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010662490.1	0	PREDICTED: L-idonate 5-dehydrogenase isoform X1 [Vitis vinifera]
COG	YP_004970932.1	1E-90	theronine dehydrogenase-like Zn-dependent dehydrogenase
Swissprot	tr\|Q1PSI9\|IDND_VITVI	0	L-idonate 5-dehydrogenase
trEMBL	tr\|B9I4E4\|B9I4E4_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE97062.2}
TAIR10	AT5G51970.2	8E-158	GroES-like zinc-binding alcohol dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	3088886	3094000	+
GWHAAZE00000008	mRNA	3088886	3094000	+
GWHAAZE00000008	exon	3088886	3089003	+
GWHAAZE00000008	exon	3091351	3091418	+
GWHAAZE00000008	exon	3091578	3091814	+
GWHAAZE00000008	exon	3091919	3092209	+
GWHAAZE00000008	exon	3092760	3092947	+
GWHAAZE00000008	exon	3093712	3093886	+
GWHAAZE00000008	exon	3093974	3094000	+
GWHAAZE00000008	CDS	3088886	3089003	+
GWHAAZE00000008	CDS	3091351	3091418	+
GWHAAZE00000008	CDS	3091578	3091814	+
GWHAAZE00000008	CDS	3091919	3092209	+
GWHAAZE00000008	CDS	3092760	3092947	+
GWHAAZE00000008	CDS	3093712	3093886	+
GWHAAZE00000008	CDS	3093974	3094000	+

Transcript Sequence
>GWHTAAZE026379 ATGGGGAAAGGAGGGAATGAAGAAGGAAAGGATGATGGACAAGGTGAAGACAACAAGGCAGCTTGGCTACTTGGTGTTAAAAACCTTCAAATTCAACCTTACAATCTCCCTCCTCTTGGCCCTCAGGATGTTAAAGTCCAGATCAAAGCAGTTGGCATTTGTGGTAGTGATGTTCATCATTTCAAGAACATGAGATGCGGAAATTTTATTGTGAAAAAGCCAATGGTAATTGGGCACGAGTGTGCTGGTATCATCCAACAAGTAGGTAGTGACGTCAAGTTTTTGGCTGTTGGCGACCATGTCGCACTAGAGCCTGGCATTAGTTGCTGGGATTGCAAACATTGCAAGGACGGTCGCTACAATCTGTGCCCGAAGATGAAGTTTTTTGGCTCTCCCCCTAACAATGGCTCTTTAGCAAATCAGGTAGTGCATCCAGCAAACCTATGTTTCAAGTTACCGGAAAACGTGAGCCTGGAAGAAGGGGCAATGTGCGAGCCCTTAAGTGTAGGGCTCCACGCTTGTCGACGAGCCAATGTTAGCCCACATACTCGAGTGGTGATCATGGGAGCTGGACCTATTGGCCTCGTCACCATGCTAGCGGCTCGTGCTTTTGGAGTCCCCAAAATCGTTATGGTTGACATAGATGATCGTCGCTTATCATTTGCGAAAGATCATGGTGCAGATGAGATTATTCAAGTTTCCAACAATATTCAGGACATAGGTGAAGAAGTGGAGAATATACACAAAGCAATGGGTGGGAATGTGGATGTGAGTTTTGATTGTGTTGGATTTAATAAAACAATGTCAACAGCTTTGAGGGCTACTAGACCTGGTGGTAAGGTGTGCCTTGTAGGAATGGGACAGAGTGATATGACCATCCCTCTTACTCCTGCTGCTGCTAGGGAGATTGATATAATAGGCATATTCAGATATAGGAATACATGGCCGCTGTGTATTGAGCTAATGAGTACTGGTAAAATTGATGTGAAGCCACTCATAACTCATAGGTTCAATTTTAGTCAAGAGGAAGTTGAACAAGCCTTTGAAACAAGTGCTGGTGGTGGCAATGCCATTAAGATTACATGTTCGAGTTTCTTTTCTTGA

Network for GWHGAAZE026345

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	42	152	4.20E-31
PF00107.27	ADH_zinc_N	192	322	9.70E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00008	SORD, gutB	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Fructose and mannose metabolism	map00051

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	100.005
	SRR3591706	second leaf	102.770
	SRR3591707	mature leaf	191.953
	SRR3591708	Shoot apex	70.533
	SRR3591709	Stem	170.163
	SRR3591710	White floral bud	41.336
	SRR3591711	White flower	57.334
	SRR3591712	Green floral bud	23.287
	SRR3591713	Yellow flower	100.266
SRP173429	SRR8316895	Juvenile bud stage	25.885
	SRR8316896	Juvenile bud stage	37.782
	SRR8316897	Juvenile bud stage	15.079
	SRR8316894	Third green stage	15.737
	SRR8316900	Third green stage	44.354
	SRR8316901	Third green stage	41.251
	SRR8316898	Complete white stage	40.865
	SRR8316899	Complete white stage	100.651
	SRR8316903	Complete white stage	55.030
	SRR8316902	Silver flowering stage	37.038
	SRR8316904	Silver flowering stage	44.342
	SRR8316905	Silver flowering stage	24.842
	SRR8316906	Gold flowering stage	92.702
	SRR8316907	Gold flowering stage	92.359
	SRR8316908	Gold flowering stage	73.959
SRP132670	SRR6706286	Control	54.131
	SRR6706287	Light intensity 50%	48.493
	SRR6706288	Light intensity 20%	52.126
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.034
	CNS0095593	Slightly white alabastrum(diploid) 2	23.601
	CNS0095594	Slightly white alabastrum(diploid) 3	27.889
	CNS0095595	Whole white alabastrum(diploid) 2	23.221
	CNS0095596	Whole white alabastrum(diploid) 3	18.737
	CNS0095597	Whole white alabastrum(diploid) 4	23.079
	CNS0095598	Silvery flower (diploied) 1	89.793
	CNS0095599	Silvery flower (diploied) 2	81.234
	CNS0095600	Silvery flower (diploied) 3	108.966
	CNS0095601	Golden flower (diploid) 1	86.938
	CNS0095602	Golden flower (diploid) 2	137.141
	CNS0095603	Golden flower (diploid) 3	127.500
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.370
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.983
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.906
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.477
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.742
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.771
	CNS0095610	Silvery flower (tetraploid) 1	151.245
	CNS0095611	Silvery flower (tetraploid) 2	165.898
	CNS0095612	Silvery flower (tetraploid) 3	150.793
	CNS0095613	Golden flower (tetraploid) 1	138.756
	CNS0095614	Golden flower (tetraploid) 2	167.796
	CNS0095615	Golden flower (tetraploid) 3	250.996
CRA001975	CRR073297	Stem 1	54.623
	CRR073298	Stem 2	49.325
	CRR073299	Stem 3	48.412
	CRR073300	Leaf 1	43.038
	CRR073301	Leaf 2	46.831
	CRR073302	Leaf 3	57.209
	CRR073303	Juvenile bud 1	59.954
	CRR073304	Juvenile bud 2	58.420
	CRR073305	Juvenile bud 3	68.938
	CRR073306	Third green 1	47.921
	CRR073307	Third green 2	46.306
	CRR073308	Third green 3	46.573
	CRR073309	Second white 1	82.283
	CRR073310	Second white 2	80.200
	CRR073311	Second white 3	62.319
	CRR073312	Silver flowering 1	63.125
	CRR073313	Silver flowering 2	56.650
	CRR073314	Silver flowering 3	47.682
	CRR073315	Gold flowering 1	114.431
	CRR073316	Gold flowering 2	137.489
	CRR073317	Gold flowering 3	94.047
	CRR073318	Tawny withering 1	108.615
	CRR073319	Tawny withering 2	90.619
	CRR073320	Tawny withering 3	80.786