Detail information of GWHGAAZE026336


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP05249.11.47624E-76unnamed protein product [Coffea canephora]
Swissprottr|Q9M0L0|DRE1A_ARATH2E-63Dehydration-responsive element-binding protein 1A
trEMBLtr|A0A068UAP6|A0A068UAP6_COFCA6E-77Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313|EMBL:CDP05249.1}
TAIR10AT4G25480.16E-45dehydration response element B1A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene30109763011647-
GWHAAZE00000008mRNA30109763011647-
GWHAAZE00000008exon30109763011647-
GWHAAZE00000008CDS30109763011647-
Transcript Sequence

Network for GWHGAAZE026336

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00847.21AP2551051.30E-12
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAP2/ERF-ERF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003700molecular_functionDNA-binding transcription factor activity
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf117.097
SRR3591706second leaf26.897
SRR3591707mature leaf12.998
SRR3591708Shoot apex63.014
SRR3591709Stem73.681
SRR3591710White floral bud56.330
SRR3591711White flower84.023
SRR3591712Green floral bud25.483
SRR3591713Yellow flower42.743
SRP173429 SRR8316895Juvenile bud stage 192.387
SRR8316896Juvenile bud stage 157.265
SRR8316897Juvenile bud stage 159.889
SRR8316894Third green stage 17.559
SRR8316900Third green stage 26.318
SRR8316901Third green stage 78.977
SRR8316898Complete white stage 1.205
SRR8316899Complete white stage 168.734
SRR8316903Complete white stage 2.131
SRR8316902Silver flowering stage6.140
SRR8316904Silver flowering stage1.949
SRR8316905Silver flowering stage5.363
SRR8316906Gold flowering stage 25.370
SRR8316907Gold flowering stage 12.174
SRR8316908Gold flowering stage 5.575
SRP132670SRR6706286Control2.692
SRR6706287Light intensity 50%3.204
SRR6706288Light intensity 20%1.447
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1103.035
CNS0095593Slightly white alabastrum(diploid) 2203.662
CNS0095594Slightly white alabastrum(diploid) 3187.195
CNS0095595Whole white alabastrum(diploid) 2134.741
CNS0095596Whole white alabastrum(diploid) 315.560
CNS0095597Whole white alabastrum(diploid) 474.863
CNS0095598Silvery flower (diploied) 1353.434
CNS0095599Silvery flower (diploied) 2300.227
CNS0095600Silvery flower (diploied) 3122.073
CNS0095601Golden flower (diploid) 1317.351
CNS0095602Golden flower (diploid) 2246.585
CNS0095603Golden flower (diploid) 3248.831
CNS0095604Slightly white alabastrum(tetraploid) 10.577
CNS0095605Slightly white alabastrum(tetraploid) 20.379
CNS0095606Slightly white alabastrum(tetraploid) 30.464
CNS0095607Whole white alabastrum(tetraploid) 11.335
CNS0095608Whole white alabastrum(tetraploid) 20.237
CNS0095609Whole white alabastrum(tetraploid) 30.410
CNS0095610Silvery flower (tetraploid) 11.986
CNS0095611Silvery flower (tetraploid) 20.303
CNS0095612Silvery flower (tetraploid) 322.123
CNS0095613Golden flower (tetraploid) 11.240
CNS0095614Golden flower (tetraploid) 20.532
CNS0095615Golden flower (tetraploid) 32.688
CRA001975CRR073297Stem 1100.118
CRR073298Stem 2103.005
CRR073299Stem 3131.375
CRR073300Leaf 1173.249
CRR073301Leaf 2243.324
CRR073302Leaf 3154.898
CRR073303Juvenile bud 1130.341
CRR073304Juvenile bud 2253.468
CRR073305Juvenile bud 3187.326
CRR073306Third green 1188.640
CRR073307Third green 2332.350
CRR073308Third green 3137.277
CRR073309Second white 1302.868
CRR073310Second white 2351.019
CRR073311Second white 3220.386
CRR073312Silver flowering 1358.004
CRR073313Silver flowering 2402.229
CRR073314Silver flowering 3217.829
CRR073315Gold flowering 1286.240
CRR073316Gold flowering 2347.712
CRR073317Gold flowering 3251.230
CRR073318Tawny withering 160.562
CRR073319Tawny withering 2200.363
CRR073320Tawny withering 334.772