Gene detail

Detail information of GWHGAAZE026273

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002525474.1	1.1141E-134	serine-threonine protein kinase, plant-type, putative [Ricinus communis]
COG	YP_003474185.1	8E-16	serine/threonine protein kinase
Swissprot	tr\|Q9FZB8\|Y5181_ARATH	1E-39	Probable LRR receptor-like serine/threonine-protein kinase At1g51810 (Precursor)
trEMBL	tr\|B9SHK5\|B9SHK5_RICCO	4E-135	Serine-threonine protein kinase, plant-type, putative {ECO:0000313\|EMBL:EEF36964.1}
TAIR10	AT2G29000.1	2E-37	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	1824251	1827115	+
GWHAAZE00000008	mRNA	1824251	1827115	+
GWHAAZE00000008	exon	1824251	1824398	+
GWHAAZE00000008	exon	1824619	1825074	+
GWHAAZE00000008	exon	1825714	1825829	+
GWHAAZE00000008	exon	1826038	1826295	+
GWHAAZE00000008	exon	1826449	1826653	+
GWHAAZE00000008	exon	1827063	1827115	+
GWHAAZE00000008	CDS	1824251	1824398	+
GWHAAZE00000008	CDS	1824619	1825074	+
GWHAAZE00000008	CDS	1825714	1825829	+
GWHAAZE00000008	CDS	1826038	1826295	+
GWHAAZE00000008	CDS	1826449	1826653	+
GWHAAZE00000008	CDS	1827063	1827115	+

Transcript Sequence
>GWHTAAZE026307 ATGAAAACTAGAATGATGAGGGAGTTAGCCAAGGCGGCCCATTTATTGATCTACTACTGCTGCCGCTGGCGTGTTATTACTTTTGCCTTTTTGGTTCACTCTACTGCTGCTTTGGATGGAGATCAGCCATCACCACCTGTTCTTTCAGATTCATTGGCAGAAGCAATGACAATTATTTTAATAGCTACGATTGGGCCGATTGTGATTATGCTGATATTTAAGTACTGCCTAAACAAAAGAAGCAAATATTCCAAAATCAAAGAGAATAATAATACTGGCTTATGGACGGGCCTTTATAAATTCTCCAAGGCCGAAATTGAGATTGCCATAAATTACCATAACAAAGAAAAGAATACTAGTAGTGCTGGAAGGGTAAATATGGGAATTTTACCCAATGGACAAGTTGTGGCCATCGAGGAGATTTGTAAGAGCAGCAGCAGATACAGACCGTCCGTTTCTTTTGAAAGAGAAATCCAACGGCTGTCATTTATTCGACATCCAAACTTGGTTTCTTTCTTTGGTTATTGCACTTCTCAAGATCAAGAGCTGCAATACATTGTTTATGAACATTGTGCTGCTGGAAATCTTGCTCAACATCTAATCCGAAAAGACAGCGTTCTATGCTGGGAAAGAAGAGTTATGATCCTAAGGGACTGTGCTCGTGCAATTAGATATCTCCATTTCCATACAGATGGCTGTATTATTCACGGGGACATCAACCTTACTAGCATCCGTTTGAATGAGAAATTTGAACCAAAACTCTCCCACTTTGGACTGGCAAAAGTTTCGGGATTGGAGGAAAGATTATTTGCAGTAAATGAAGGAACAGCAGGGTATATAGACCCGGAATACATAAGCAACGGGATTCTTAGTTCTGCTAGCGATGTCTACAGTTTTGGTATGGTGGCTCTGCAACTTCTATCTGGACAAAAAGTCCTTCAACTGGATCTTGAAGCTAGACATCAGCTTACAAGAAAGGCTAAGGCCGTGAGCATGGGGAAACGTCCATTAACAGATTTTGAAGACCCTGCGCTGAATGGAAAATGCAATACTGCGGATTTTGAATCCATACTAGAAGTTGCGGTGTTATGCGTTGCCAGCTCAAAAATGGGTCGACCCACGATTGATGTTGTTTTTGAAACCATGGACAAAGCTTGGAAGAACACGATCGCTTACGTGCATGAAAGCAGCGAAACGGCTGAGTTCAACGGGGAATTGCGAATCCAAACTACTTGA

Network for GWHGAAZE026273

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	122	325	3.20E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_URK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.205
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.025
	SRR3591712	Green floral bud	0.062
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.043
	SRR8316896	Juvenile bud stage	0.094
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.175
	SRR8316901	Third green stage	0.276
	SRR8316898	Complete white stage	0.035
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.229
	SRR8316902	Silver flowering stage	0.040
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.075
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.036
SRP132670	SRR6706286	Control	0.048
	SRR6706287	Light intensity 50%	0.029
	SRR6706288	Light intensity 20%	0.007
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.135
	CNS0095594	Slightly white alabastrum(diploid) 3	0.034
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.223
	CNS0095597	Whole white alabastrum(diploid) 4	0.209
	CNS0095598	Silvery flower (diploied) 1	0.238
	CNS0095599	Silvery flower (diploied) 2	0.172
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.262
	CNS0095602	Golden flower (diploid) 2	0.120
	CNS0095603	Golden flower (diploid) 3	0.244
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.096
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.060
	CRR073301	Leaf 2	0.137
	CRR073302	Leaf 3	0.122
	CRR073303	Juvenile bud 1	0.105
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.053
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.032
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.093
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.184
	CRR073317	Gold flowering 3	0.052
	CRR073318	Tawny withering 1	0.038
	CRR073319	Tawny withering 2	0.227
	CRR073320	Tawny withering 3	0.000