Gene detail

Detail information of GWHGAAZE026271

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAA86930.1	0	lupeol synthase [Olea europaea]
COG	YP_004346025.1	2E-145	squalene/oxidosqualene cyclase
Swissprot	tr\|Q8W3Z2\|LUPS_BETPL	0	Lupeol synthase
trEMBL	tr\|Q9SLW3\|Q9SLW3_OLEEU	0	Lupeol synthase {ECO:0000313\|EMBL:BAA86930.1}
TAIR10	AT2G07050.1	0	cycloartenol synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	1783360	1792620	-
GWHAAZE00000008	mRNA	1783360	1792620	-
GWHAAZE00000008	exon	1783360	1783579	-
GWHAAZE00000008	exon	1783826	1783969	-
GWHAAZE00000008	exon	1784062	1784108	-
GWHAAZE00000008	exon	1784231	1784287	-
GWHAAZE00000008	exon	1784439	1784537	-
GWHAAZE00000008	exon	1784626	1784748	-
GWHAAZE00000008	exon	1784833	1784952	-
GWHAAZE00000008	exon	1786036	1786224	-
GWHAAZE00000008	exon	1786374	1786540	-
GWHAAZE00000008	exon	1786718	1786802	-
GWHAAZE00000008	exon	1787804	1788001	-
GWHAAZE00000008	exon	1788100	1788189	-
GWHAAZE00000008	exon	1790122	1790316	-
GWHAAZE00000008	exon	1792423	1792620	-
GWHAAZE00000008	CDS	1792423	1792620	-
GWHAAZE00000008	CDS	1790122	1790316	-
GWHAAZE00000008	CDS	1788100	1788189	-
GWHAAZE00000008	CDS	1787804	1788001	-
GWHAAZE00000008	CDS	1786718	1786802	-
GWHAAZE00000008	CDS	1786374	1786540	-
GWHAAZE00000008	CDS	1786036	1786224	-
GWHAAZE00000008	CDS	1784833	1784952	-
GWHAAZE00000008	CDS	1784626	1784748	-
GWHAAZE00000008	CDS	1784439	1784537	-
GWHAAZE00000008	CDS	1784231	1784287	-
GWHAAZE00000008	CDS	1784062	1784108	-
GWHAAZE00000008	CDS	1783826	1783969	-
GWHAAZE00000008	CDS	1783360	1783579	-

Transcript Sequence
>GWHTAAZE026305 ATGTGGAAGCTAAAGATTGCGGATGGACATGATCCGTGGCTTACAACGACTAACAATCACGTGGGACGACAACATTGGGAGTTCGATCCTGAAGAGGGAACGCCTGAAGAACGAGCTCGTGTTGAAAAGCTTCGTGATGTCTTCAAGAAGAATCGGTTTCAAATCAAACAAAGTTCTGATTTACTCATGCGCATCCAGCTTAACAAGGAGAACCTATCATGTGGGGCTGGGCCAATCCCACCGGCGATTAAATTGGAAGAAACAGAGGAGGTCACGGTGGAAGCAGTGACAAGTACATTGAGAAGGGGCATCGGCTTCTATTCCACAATTCAGGCCCATGATGGCCACTGGCCTGCTGAATCTGCCGGCCCTTTGTTCTTTCTTCCTCCCCTGGTAATAGCTCTGTATATAACAGGAGCAGTCAATGCAATTCTGTCACCTGAACATCAGAAGGAGATTATACGCTACATATACAATCATCAGAATGGTGATGGAGGTTGGGGAATACATATAGAAGGTCACAGTACTGTATTTGGGTCGTGCCTTAGCTACGTTGCCTTAAGGTTGTTAGGTGAAGGACCTGATGATGGTGAGGACAGAGCCGTGGCTAGAGGCCGCAAATGGATACTTGACCATGGTGGTGCAGTTGGAATTCCATCATGGGGAAAATTTTGGCTTACGGTTCTTGGAGTATACGAGTGGGAAGGCTGCAATCCAATGCCCCCGGAATTCTGGCTTCTTCCTAAAATCTTTCCCATCCATCCAGGCAAATTATTGTGCTACTGTAGATTGGTTTACATGCCAATGTCATACTTATACGGCAAGAGGTTTGTCGGAAAAATAAATGTATTGGTTCTATCTCTACGACAAGAGCTCTACACCGAACCTTATCATACAATAGATTGGAATCAAATGCGAAACAATTGTGCAAAGGAGGATCTCTACTATCCACATCCTTTAGTACAAGATATGGTTTGGGGCTTCCTTCACAATGTTGCTGAGCCTATTTTGAGTTGTTGGCCCTTTTCGAAATTGAGAGGGAAGGCATTAAAAGTTGCAATGGAACATGTGCATTACGAAGATGAGAGCAGCAGATACCTTTGCATTGGTTGCGTAGAAAAAAGTTTTGGCTGTCAATTGTGGGATGCAGCCTTTTCTGTTCAAGCAATCTTATCAAGTAATCTTGTAGAAGACTATGGTTCAACTCTTCAGAAGGCACACAACTTTTTAAAAGCCTCACAGGTCCAAGATAATCCCCCTGGAAATTTCAACAAAATGTATAGACACACTTCTAAAGGTTCATGGACATTTTCAATGCAAGACCACGGTTGGCAAGTCTCTGACTGTACGGCTGAAGGGTTAAAGGCTTCACTTTTGCTCTCACAAATTCGACCAGAACTTGTTGGGGAGAAAATTGAAGCAGAGCGCCTATACGATGCTGTCAATGTTATTCTTTCCTTACAAAGTAAGAATGGTGGTTTTCCAGCCTGGGAACCACAGAGGGCATATTATTGGATAGAGAAGCTCAACCCTACGGAGTTCTTCGAAGACGTTTTTATCGAGCGAGAGTACGTGGAATGTACTTCGTCAGCAATTCAGGCTTTAACATTCTTTAAGAAACTACACCCTGGACACCGAAGAAAGGAAATTGAATCTTGTATCACGAGAGCAGTACAATACATTGAAGACACACAAAAATCGGATGGTTCATGGTATGGTTGCTGGGGAATTTGCTTCACCTACGGTGGGTGGTTTGCGGTGGAGGGGCTGGTGGCTTGTGGGAGGAATATACACAATAGTCCCGCACTACATAAAGCTTGCGAGTTTCTTCTATCAAAACAACTACTTGATGGCGGTTGGGGAGAGAGTTATCTTTCAAGCTCAAATAAGGTAGGAATCCTTATGTTCACCTTATTAGTTCTAAGTGCGTAG

Network for GWHGAAZE026271

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13249.7	SQHop_cyclase_N	110	359	2.70E-38
PF13243.7	SQHop_cyclase_C	380	628	1.80E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20659	LUS	Biosynthesis of secondary metabolites	map01110
K20659	LUS	Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0016104	biological_process	triterpenoid biosynthetic process
GO:0005811	cellular_component	lipid droplet
GO:0016866	molecular_function	intramolecular transferase activity
GO:0000250	molecular_function	lanosterol synthase activity
GO:0042300	molecular_function	beta-amyrin synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.125
	SRR3591706	second leaf	0.050
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.250
	SRR3591709	Stem	0.862
	SRR3591710	White floral bud	72.677
	SRR3591711	White flower	0.709
	SRR3591712	Green floral bud	65.599
	SRR3591713	Yellow flower	5.274
SRP173429	SRR8316895	Juvenile bud stage	15.340
	SRR8316896	Juvenile bud stage	31.218
	SRR8316897	Juvenile bud stage	5.661
	SRR8316894	Third green stage	31.337
	SRR8316900	Third green stage	118.133
	SRR8316901	Third green stage	95.878
	SRR8316898	Complete white stage	0.217
	SRR8316899	Complete white stage	0.432
	SRR8316903	Complete white stage	0.524
	SRR8316902	Silver flowering stage	0.722
	SRR8316904	Silver flowering stage	0.185
	SRR8316905	Silver flowering stage	0.041
	SRR8316906	Gold flowering stage	1.104
	SRR8316907	Gold flowering stage	1.796
	SRR8316908	Gold flowering stage	12.149
SRP132670	SRR6706286	Control	243.086
	SRR6706287	Light intensity 50%	241.724
	SRR6706288	Light intensity 20%	254.928
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.899
	CNS0095593	Slightly white alabastrum(diploid) 2	4.369
	CNS0095594	Slightly white alabastrum(diploid) 3	11.651
	CNS0095595	Whole white alabastrum(diploid) 2	10.051
	CNS0095596	Whole white alabastrum(diploid) 3	14.130
	CNS0095597	Whole white alabastrum(diploid) 4	41.821
	CNS0095598	Silvery flower (diploied) 1	0.420
	CNS0095599	Silvery flower (diploied) 2	0.600
	CNS0095600	Silvery flower (diploied) 3	0.545
	CNS0095601	Golden flower (diploid) 1	0.433
	CNS0095602	Golden flower (diploid) 2	1.253
	CNS0095603	Golden flower (diploid) 3	1.086
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.825
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.128
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.939
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.418
	CNS0095609	Whole white alabastrum(tetraploid) 3	66.812
	CNS0095610	Silvery flower (tetraploid) 1	7.791
	CNS0095611	Silvery flower (tetraploid) 2	3.200
	CNS0095612	Silvery flower (tetraploid) 3	11.998
	CNS0095613	Golden flower (tetraploid) 1	36.834
	CNS0095614	Golden flower (tetraploid) 2	13.539
	CNS0095615	Golden flower (tetraploid) 3	31.068
CRA001975	CRR073297	Stem 1	16.066
	CRR073298	Stem 2	20.492
	CRR073299	Stem 3	16.327
	CRR073300	Leaf 1	13.161
	CRR073301	Leaf 2	10.967
	CRR073302	Leaf 3	24.032
	CRR073303	Juvenile bud 1	0.366
	CRR073304	Juvenile bud 2	3.204
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.979
	CRR073308	Third green 3	0.125
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.023
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.025
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.012
	CRR073319	Tawny withering 2	0.014
	CRR073320	Tawny withering 3	0.022