Detail information of GWHGAAZE026241


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009603199.15.91022E-17PREDICTED: uncharacterized protein LOC104098231 [Nicotiana tomentosiformis]
trEMBLtr|K4CMQ1|K4CMQ1_SOLLC4E-17Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g075340.2.1}
TAIR10AT2G35610.11E-12xyloglucanase 113

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene875499876256-
GWHAAZE00000008mRNA875499876256-
GWHAAZE00000008exon875499875545-
GWHAAZE00000008exon876091876256-
GWHAAZE00000008CDS876091876256-
GWHAAZE00000008CDS875499875545-
Transcript Sequence

Network for GWHGAAZE026241

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20784XEG113 Other types of O-glycan biosynthesis map00514

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.709
SRR3591706second leaf5.186
SRR3591707mature leaf9.283
SRR3591708Shoot apex5.750
SRR3591709Stem13.411
SRR3591710White floral bud9.513
SRR3591711White flower15.300
SRR3591712Green floral bud9.464
SRR3591713Yellow flower12.996
SRP173429 SRR8316895Juvenile bud stage 6.544
SRR8316896Juvenile bud stage 7.885
SRR8316897Juvenile bud stage 3.755
SRR8316894Third green stage 3.922
SRR8316900Third green stage 12.237
SRR8316901Third green stage 10.584
SRR8316898Complete white stage 3.736
SRR8316899Complete white stage 12.530
SRR8316903Complete white stage 6.574
SRR8316902Silver flowering stage6.557
SRR8316904Silver flowering stage8.287
SRR8316905Silver flowering stage4.778
SRR8316906Gold flowering stage 19.180
SRR8316907Gold flowering stage 13.417
SRR8316908Gold flowering stage 22.737
SRP132670SRR6706286Control12.919
SRR6706287Light intensity 50%12.059
SRR6706288Light intensity 20%14.118
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.576
CNS0095593Slightly white alabastrum(diploid) 23.908
CNS0095594Slightly white alabastrum(diploid) 36.284
CNS0095595Whole white alabastrum(diploid) 25.626
CNS0095596Whole white alabastrum(diploid) 33.765
CNS0095597Whole white alabastrum(diploid) 43.382
CNS0095598Silvery flower (diploied) 14.666
CNS0095599Silvery flower (diploied) 22.644
CNS0095600Silvery flower (diploied) 316.996
CNS0095601Golden flower (diploid) 16.795
CNS0095602Golden flower (diploid) 214.393
CNS0095603Golden flower (diploid) 318.925
CNS0095604Slightly white alabastrum(tetraploid) 14.639
CNS0095605Slightly white alabastrum(tetraploid) 21.940
CNS0095606Slightly white alabastrum(tetraploid) 312.725
CNS0095607Whole white alabastrum(tetraploid) 11.965
CNS0095608Whole white alabastrum(tetraploid) 21.042
CNS0095609Whole white alabastrum(tetraploid) 311.397
CNS0095610Silvery flower (tetraploid) 120.030
CNS0095611Silvery flower (tetraploid) 214.745
CNS0095612Silvery flower (tetraploid) 39.310
CNS0095613Golden flower (tetraploid) 13.700
CNS0095614Golden flower (tetraploid) 212.225
CNS0095615Golden flower (tetraploid) 312.584
CRA001975CRR073297Stem 15.015
CRR073298Stem 24.669
CRR073299Stem 32.825
CRR073300Leaf 16.283
CRR073301Leaf 24.116
CRR073302Leaf 35.411
CRR073303Juvenile bud 13.995
CRR073304Juvenile bud 22.226
CRR073305Juvenile bud 34.593
CRR073306Third green 11.801
CRR073307Third green 20.440
CRR073308Third green 31.024
CRR073309Second white 11.993
CRR073310Second white 22.027
CRR073311Second white 31.825
CRR073312Silver flowering 13.639
CRR073313Silver flowering 21.202
CRR073314Silver flowering 32.592
CRR073315Gold flowering 11.128
CRR073316Gold flowering 22.474
CRR073317Gold flowering 31.425
CRR073318Tawny withering 13.869
CRR073319Tawny withering 23.013
CRR073320Tawny withering 34.141