Detail information of GWHGAAZE026236


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP10075.10unnamed protein product [Coffea canephora]
COGNP_487506.12E-39hypothetical protein alr3466
Swissprottr|Q3Y8L7|DAW1_CHLRE3E-19Dynein assembly factor with WDR repeat domains 1
trEMBLtr|A0A068UNG1|A0A068UNG1_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_43 {ECO:0000313|EMBL:CDP10075.1}
TAIR10AT3G18140.13E-162Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene772483777185-
GWHAAZE00000008mRNA772483777185-
GWHAAZE00000008exon777078777185-
GWHAAZE00000008exon775890775991-
GWHAAZE00000008exon775660775772-
GWHAAZE00000008exon775496775565-
GWHAAZE00000008exon775289775366-
GWHAAZE00000008exon774241774357-
GWHAAZE00000008exon774034774128-
GWHAAZE00000008exon773804773883-
GWHAAZE00000008exon773093773152-
GWHAAZE00000008exon772483772645-
GWHAAZE00000008CDS777078777185-
GWHAAZE00000008CDS775890775991-
GWHAAZE00000008CDS775660775772-
GWHAAZE00000008CDS775496775565-
GWHAAZE00000008CDS775289775366-
GWHAAZE00000008CDS774241774357-
GWHAAZE00000008CDS774034774128-
GWHAAZE00000008CDS773804773883-
GWHAAZE00000008CDS773093773152-
GWHAAZE00000008CDS772521772645-
GWHAAZE00000008three_prime_UTR772483772520-
Transcript Sequence

Network for GWHGAAZE026236

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD4036620.21
PF00400.33WD40691062.40E-08
PF00400.33WD401121470.011
PF00400.33WD402022439.20E-05
PF00400.33WD402502852.30E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K08266MLST8, GBL PI3K-Akt signaling pathway map04151
mTOR signaling pathwaymap04150
Autophagy - animalmap04140
Autophagy - yeastmap04138
Autophagy - othermap04136
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf41.139
SRR3591706second leaf23.029
SRR3591707mature leaf25.500
SRR3591708Shoot apex41.022
SRR3591709Stem36.727
SRR3591710White floral bud22.577
SRR3591711White flower23.697
SRR3591712Green floral bud32.394
SRR3591713Yellow flower24.778
SRP173429 SRR8316895Juvenile bud stage 34.716
SRR8316896Juvenile bud stage 44.794
SRR8316897Juvenile bud stage 21.007
SRR8316894Third green stage 18.819
SRR8316900Third green stage 57.779
SRR8316901Third green stage 51.621
SRR8316898Complete white stage 28.700
SRR8316899Complete white stage 72.972
SRR8316903Complete white stage 41.513
SRR8316902Silver flowering stage23.186
SRR8316904Silver flowering stage32.827
SRR8316905Silver flowering stage17.888
SRR8316906Gold flowering stage 59.441
SRR8316907Gold flowering stage 60.968
SRR8316908Gold flowering stage 53.720
SRP132670SRR6706286Control55.892
SRR6706287Light intensity 50%59.424
SRR6706288Light intensity 20%68.714
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.954
CNS0095593Slightly white alabastrum(diploid) 231.723
CNS0095594Slightly white alabastrum(diploid) 334.183
CNS0095595Whole white alabastrum(diploid) 227.338
CNS0095596Whole white alabastrum(diploid) 331.318
CNS0095597Whole white alabastrum(diploid) 430.180
CNS0095598Silvery flower (diploied) 135.243
CNS0095599Silvery flower (diploied) 233.385
CNS0095600Silvery flower (diploied) 347.815
CNS0095601Golden flower (diploid) 132.967
CNS0095602Golden flower (diploid) 240.280
CNS0095603Golden flower (diploid) 339.923
CNS0095604Slightly white alabastrum(tetraploid) 131.454
CNS0095605Slightly white alabastrum(tetraploid) 230.393
CNS0095606Slightly white alabastrum(tetraploid) 343.973
CNS0095607Whole white alabastrum(tetraploid) 119.134
CNS0095608Whole white alabastrum(tetraploid) 221.374
CNS0095609Whole white alabastrum(tetraploid) 334.800
CNS0095610Silvery flower (tetraploid) 134.148
CNS0095611Silvery flower (tetraploid) 245.527
CNS0095612Silvery flower (tetraploid) 352.373
CNS0095613Golden flower (tetraploid) 132.341
CNS0095614Golden flower (tetraploid) 234.496
CNS0095615Golden flower (tetraploid) 335.270
CRA001975CRR073297Stem 154.139
CRR073298Stem 246.828
CRR073299Stem 348.807
CRR073300Leaf 160.677
CRR073301Leaf 259.537
CRR073302Leaf 362.143
CRR073303Juvenile bud 162.386
CRR073304Juvenile bud 262.137
CRR073305Juvenile bud 358.026
CRR073306Third green 167.150
CRR073307Third green 248.640
CRR073308Third green 344.969
CRR073309Second white 169.037
CRR073310Second white 247.789
CRR073311Second white 340.979
CRR073312Silver flowering 136.270
CRR073313Silver flowering 236.351
CRR073314Silver flowering 327.593
CRR073315Gold flowering 140.112
CRR073316Gold flowering 246.917
CRR073317Gold flowering 339.015
CRR073318Tawny withering 145.743
CRR073319Tawny withering 243.102
CRR073320Tawny withering 343.784