Gene detail

Detail information of GWHGAAZE026181

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283561.1	0	PREDICTED: COP9 signalosome complex subunit 5b-like [Vitis vinifera]
COG	YP_008797954.1	1E-12	26S proteasome regulatory subunit N11-like protein
Swissprot	tr\|Q8LAZ7\|CSN5B_ARATH	0	COP9 signalosome complex subunit 5b
trEMBL	tr\|F6I0N0\|F6I0N0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60496.1}
TAIR10	AT1G22920.1	3E-169	COP9 signalosome 5A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	74967130	74972580	+
GWHAAZE00000007	mRNA	74967130	74972580	+
GWHAAZE00000007	exon	74967130	74967534	+
GWHAAZE00000007	exon	74969602	74969883	+
GWHAAZE00000007	exon	74969967	74970114	+
GWHAAZE00000007	exon	74970897	74970979	+
GWHAAZE00000007	exon	74972164	74972241	+
GWHAAZE00000007	exon	74972491	74972580	+
GWHAAZE00000007	CDS	74967130	74967534	+
GWHAAZE00000007	CDS	74969602	74969883	+
GWHAAZE00000007	CDS	74969967	74970114	+
GWHAAZE00000007	CDS	74970897	74970979	+
GWHAAZE00000007	CDS	74972164	74972241	+
GWHAAZE00000007	CDS	74972491	74972580	+

Transcript Sequence
>GWHTAAZE026215 ATGGATCCCTACTCCTTCTCTTCCTCAGCAGCAATGGCGCAACAGACATGGGAGCTCGAGAACAACATCGTCAACATGGAGACACCGGCACCGGCCGACTCCGATGCCATCTTCTTCTACGACGAGTCGGCTCAATCCAGGTTCCAGAACGAAAAGCCCTGGGCCAATGACCCTCACTTCTTCAAGCGAGTCAAAATCTCTGCCCTAGCTCTGTTAAAGATGGTGGTTCATGCTCGATCCGGTGGAACTATTGAAGTCATGGGACTTATGCAGGGGAAAACTGACGGAGATGCTATTATTGTTATGGATGCTTTTGCGTTGCCGGTTGAGGGCACCGAAACTAGGGTTAATGCTCAGGCTGATGCTTACGAGTATATGGTTGATTATTCTCAGACCAATAAGCAGGCGGGACGGTTGGAGAATGTTGTTGGCTGGTACCATTCTCATCCTGGTTATGGATGCTGGCTTTCTGGCATTGATGTCTCCACACAAATGCTCAACCAACAGTTTCAGGAGCCTTTTCTGGCAGTTGTTATTGATCCAACAAGGACTGTTTCAGCTGGAAAAGTTGAGATAGGGGCATTTAGGACATACCCAGAGGGATATAAGCCTTCGGATGAGCCCGTCTCCGAATATCAGACCATTCCTCTTAACAAGATTGAAGACTTCGGGGTGCACTGCAAACAGTACTATTCGTTGGACATCACATATTTCAAGTCATCTCTTGATTGCCACCTCCTGGATCTGTTATGGAACAAGTATTGGGTGAATACCCTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCCGGACAAATTTCAGATTTAGCCGAAAAGCTTGAGCAAGCGGAAAATCAATTTGCTCATTCACGATTTGGGCCTTTAATTGCACCCCCTCAAAGAAAGAAAGAGGAAGAATCTCAGCTTGCAAAGATAACTCGTGATAGTGCAAAGATAACCGTTGAGCAGGTTCATGGCCTAATGTCGCAGGTTATAAAGGACATTCTTTTCAATTCTGTTCGTCAGTCCAACAGATCTCGGGCCGAATCATCAGGTCCTGAACCTATGGTTGAAAGCTGA

Network for GWHGAAZE026181

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01398.22	JAB	61	172	3.40E-34
PF18323.2	CSN5_C	260	340	6.10E-26

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	JAMM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.155
	SRR3591706	second leaf	32.662
	SRR3591707	mature leaf	30.404
	SRR3591708	Shoot apex	62.183
	SRR3591709	Stem	48.211
	SRR3591710	White floral bud	59.479
	SRR3591711	White flower	69.562
	SRR3591712	Green floral bud	76.404
	SRR3591713	Yellow flower	55.137
SRP173429	SRR8316895	Juvenile bud stage	47.749
	SRR8316896	Juvenile bud stage	65.875
	SRR8316897	Juvenile bud stage	28.800
	SRR8316894	Third green stage	22.695
	SRR8316900	Third green stage	72.281
	SRR8316901	Third green stage	63.028
	SRR8316898	Complete white stage	21.044
	SRR8316899	Complete white stage	88.719
	SRR8316903	Complete white stage	34.516
	SRR8316902	Silver flowering stage	19.132
	SRR8316904	Silver flowering stage	25.479
	SRR8316905	Silver flowering stage	11.245
	SRR8316906	Gold flowering stage	33.296
	SRR8316907	Gold flowering stage	36.614
	SRR8316908	Gold flowering stage	36.286
SRP132670	SRR6706286	Control	59.847
	SRR6706287	Light intensity 50%	61.192
	SRR6706288	Light intensity 20%	62.351
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.252
	CNS0095593	Slightly white alabastrum(diploid) 2	52.118
	CNS0095594	Slightly white alabastrum(diploid) 3	48.755
	CNS0095595	Whole white alabastrum(diploid) 2	41.845
	CNS0095596	Whole white alabastrum(diploid) 3	40.094
	CNS0095597	Whole white alabastrum(diploid) 4	38.306
	CNS0095598	Silvery flower (diploied) 1	40.461
	CNS0095599	Silvery flower (diploied) 2	36.727
	CNS0095600	Silvery flower (diploied) 3	49.739
	CNS0095601	Golden flower (diploid) 1	35.166
	CNS0095602	Golden flower (diploid) 2	53.081
	CNS0095603	Golden flower (diploid) 3	48.997
	CNS0095604	Slightly white alabastrum(tetraploid) 1	57.818
	CNS0095605	Slightly white alabastrum(tetraploid) 2	52.146
	CNS0095606	Slightly white alabastrum(tetraploid) 3	94.146
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.286
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.725
	CNS0095609	Whole white alabastrum(tetraploid) 3	69.499
	CNS0095610	Silvery flower (tetraploid) 1	44.172
	CNS0095611	Silvery flower (tetraploid) 2	58.482
	CNS0095612	Silvery flower (tetraploid) 3	52.119
	CNS0095613	Golden flower (tetraploid) 1	29.461
	CNS0095614	Golden flower (tetraploid) 2	45.142
	CNS0095615	Golden flower (tetraploid) 3	43.253
CRA001975	CRR073297	Stem 1	68.767
	CRR073298	Stem 2	63.341
	CRR073299	Stem 3	71.436
	CRR073300	Leaf 1	69.392
	CRR073301	Leaf 2	59.146
	CRR073302	Leaf 3	77.655
	CRR073303	Juvenile bud 1	76.628
	CRR073304	Juvenile bud 2	61.941
	CRR073305	Juvenile bud 3	91.441
	CRR073306	Third green 1	21.629
	CRR073307	Third green 2	22.282
	CRR073308	Third green 3	26.790
	CRR073309	Second white 1	42.784
	CRR073310	Second white 2	28.566
	CRR073311	Second white 3	17.522
	CRR073312	Silver flowering 1	25.028
	CRR073313	Silver flowering 2	38.896
	CRR073314	Silver flowering 3	25.633
	CRR073315	Gold flowering 1	35.674
	CRR073316	Gold flowering 2	47.454
	CRR073317	Gold flowering 3	45.716
	CRR073318	Tawny withering 1	41.170
	CRR073319	Tawny withering 2	48.427
	CRR073320	Tawny withering 3	59.883