Detail information of GWHGAAZE026168


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009353338.11.03458E-70PREDICTED: serine/arginine-rich splicing factor RSZ22-like isoform X2 [Pyrus x bretschneideri]
Swissprottr|Q69KL9|RZ21A_ORYSJ1E-64Serine/arginine-rich splicing factor RSZ21A
trEMBLtr|S8CY70|S8CY70_9LAMI2E-71Uncharacterized protein {ECO:0000313|EMBL:EPS72339.1} (Fragment)
TAIR10AT2G24590.11E-38RNA recognition motif and CCHC-type zinc finger domains containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7473700774739909-
GWHAAZE00000007mRNA7473700774739909-
GWHAAZE00000007exon7473982174739909-
GWHAAZE00000007exon7473901574739103-
GWHAAZE00000007exon7473793074738170-
GWHAAZE00000007exon7473700774737455-
GWHAAZE00000007CDS7473982174739909-
GWHAAZE00000007CDS7473901574739103-
GWHAAZE00000007CDS7473793074738170-
GWHAAZE00000007CDS7473733574737455-
GWHAAZE00000007three_prime_UTR7473700774737334-
Transcript Sequence

Network for GWHGAAZE026168

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_14615.60E-17
PF00098.24zf-CCHC991146.10E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12896SFRS7 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf79.966
SRR3591706second leaf41.902
SRR3591707mature leaf35.615
SRR3591708Shoot apex117.317
SRR3591709Stem54.875
SRR3591710White floral bud54.365
SRR3591711White flower58.413
SRR3591712Green floral bud68.331
SRR3591713Yellow flower34.815
SRP173429 SRR8316895Juvenile bud stage 67.052
SRR8316896Juvenile bud stage 90.949
SRR8316897Juvenile bud stage 39.342
SRR8316894Third green stage 31.961
SRR8316900Third green stage 85.123
SRR8316901Third green stage 95.064
SRR8316898Complete white stage 27.008
SRR8316899Complete white stage 101.064
SRR8316903Complete white stage 53.336
SRR8316902Silver flowering stage32.269
SRR8316904Silver flowering stage31.988
SRR8316905Silver flowering stage19.412
SRR8316906Gold flowering stage 64.757
SRR8316907Gold flowering stage 74.120
SRR8316908Gold flowering stage 70.931
SRP132670SRR6706286Control71.521
SRR6706287Light intensity 50%75.768
SRR6706288Light intensity 20%79.493
CNP0000432CNS0095592Slightly white alabastrum(diploid) 177.759
CNS0095593Slightly white alabastrum(diploid) 286.102
CNS0095594Slightly white alabastrum(diploid) 370.861
CNS0095595Whole white alabastrum(diploid) 256.120
CNS0095596Whole white alabastrum(diploid) 352.437
CNS0095597Whole white alabastrum(diploid) 440.402
CNS0095598Silvery flower (diploied) 182.757
CNS0095599Silvery flower (diploied) 261.480
CNS0095600Silvery flower (diploied) 344.973
CNS0095601Golden flower (diploid) 151.601
CNS0095602Golden flower (diploid) 237.883
CNS0095603Golden flower (diploid) 335.850
CNS0095604Slightly white alabastrum(tetraploid) 168.680
CNS0095605Slightly white alabastrum(tetraploid) 256.083
CNS0095606Slightly white alabastrum(tetraploid) 3142.212
CNS0095607Whole white alabastrum(tetraploid) 134.185
CNS0095608Whole white alabastrum(tetraploid) 227.437
CNS0095609Whole white alabastrum(tetraploid) 377.928
CNS0095610Silvery flower (tetraploid) 163.637
CNS0095611Silvery flower (tetraploid) 238.999
CNS0095612Silvery flower (tetraploid) 335.120
CNS0095613Golden flower (tetraploid) 135.043
CNS0095614Golden flower (tetraploid) 250.056
CNS0095615Golden flower (tetraploid) 325.556
CRA001975CRR073297Stem 149.272
CRR073298Stem 248.892
CRR073299Stem 345.305
CRR073300Leaf 148.491
CRR073301Leaf 249.222
CRR073302Leaf 336.703
CRR073303Juvenile bud 132.146
CRR073304Juvenile bud 224.042
CRR073305Juvenile bud 331.731
CRR073306Third green 111.116
CRR073307Third green 211.330
CRR073308Third green 310.517
CRR073309Second white 15.347
CRR073310Second white 24.255
CRR073311Second white 32.790
CRR073312Silver flowering 12.948
CRR073313Silver flowering 24.677
CRR073314Silver flowering 32.389
CRR073315Gold flowering 113.330
CRR073316Gold flowering 220.110
CRR073317Gold flowering 318.068
CRR073318Tawny withering 123.784
CRR073319Tawny withering 226.178
CRR073320Tawny withering 330.654