Gene detail

Detail information of GWHGAAZE026124

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002515392.1	dynamin, putative [Ricinus communis]
Swissprot	tr\|Q8S944\|DRP3A_ARATH	Dynamin-related protein 3A
trEMBL	tr\|B9RNS3\|B9RNS3_RICCO	Dynamin, putative {ECO:0000313\|EMBL:EEF46841.1}
TAIR10	AT4G33650.1	dynamin-related protein 3A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	73801608	73813797	+
GWHAAZE00000007	mRNA	73801608	73813797	+
GWHAAZE00000007	exon	73801608	73802066	+
GWHAAZE00000007	exon	73804866	73805148	+
GWHAAZE00000007	exon	73805340	73805368	+
GWHAAZE00000007	exon	73805486	73805587	+
GWHAAZE00000007	exon	73806218	73806286	+
GWHAAZE00000007	exon	73807420	73807533	+
GWHAAZE00000007	exon	73807743	73807791	+
GWHAAZE00000007	exon	73808936	73809045	+
GWHAAZE00000007	exon	73809257	73809376	+
GWHAAZE00000007	exon	73809451	73809543	+
GWHAAZE00000007	exon	73809641	73809778	+
GWHAAZE00000007	exon	73810156	73810242	+
GWHAAZE00000007	exon	73810379	73810477	+
GWHAAZE00000007	exon	73811933	73811972	+
GWHAAZE00000007	exon	73812609	73812748	+
GWHAAZE00000007	exon	73812864	73813010	+
GWHAAZE00000007	exon	73813186	73813238	+
GWHAAZE00000007	exon	73813355	73813454	+
GWHAAZE00000007	exon	73813726	73813797	+
GWHAAZE00000007	five_prime_UTR	73801608	73801709	+
GWHAAZE00000007	CDS	73801710	73802066	+
GWHAAZE00000007	CDS	73804866	73805148	+
GWHAAZE00000007	CDS	73805340	73805368	+
GWHAAZE00000007	CDS	73805486	73805587	+
GWHAAZE00000007	CDS	73806218	73806286	+
GWHAAZE00000007	CDS	73807420	73807533	+
GWHAAZE00000007	CDS	73807743	73807791	+
GWHAAZE00000007	CDS	73808936	73809045	+
GWHAAZE00000007	CDS	73809257	73809376	+
GWHAAZE00000007	CDS	73809451	73809543	+
GWHAAZE00000007	CDS	73809641	73809778	+
GWHAAZE00000007	CDS	73810156	73810242	+
GWHAAZE00000007	CDS	73810379	73810477	+
GWHAAZE00000007	CDS	73811933	73811972	+
GWHAAZE00000007	CDS	73812609	73812748	+
GWHAAZE00000007	CDS	73812864	73813010	+
GWHAAZE00000007	CDS	73813186	73813238	+
GWHAAZE00000007	CDS	73813355	73813454	+
GWHAAZE00000007	CDS	73813726	73813797	+

Transcript Sequence
>GWHTAAZE026158 CCCTCCTCCTTGTTCACCATCTTCTTCATTATCTATACCACCCCCAACACAAACATGACTTGGTGCTAAAACCCTAGCTCACCAACTCTCTCAAACTCAACAATGGTAAACCAAGCAAACTCAATCGGCTCATCTGTAATTCCGATCATCAACAAGCTCCAAGATATACTCGCTCCGCTCGGTGCCACCGAGCTCTCTGAGATTCAGTTGCCGCAAGTTGCTGTAATCGGAAGCCAGAGCAGCGGAAAATCGAGTGTTCTCGAAGCCCTCGTTGGCCGTGATTTCCTCCCTCGGGGATCCGGTATATGTACTCGAAGGCCACTCGTTTTGCAGTTGGAGAATCGGCCGCTCGTTCAATCCGATTGTAATGATGATGGCTTGGAGTTAGAGTGGGGCGAGTTTAGGCATTTGCCTCAAAAGCGCTTCTACGATTTCTCCCAGATTCGACGCGAAATTCAGGCAGAGACTGAAAGAGAAGCAGGATCTAACAAAGGAATTTCGGAAAAACAGATTCGGTTAAAAATATCTTCGCCATATATCCTTAATATTACTCTTATTGACTTGCCCGGGATTACTAAAGTTCCTGTGGGAGATCAACCAACTGACATAGAAGCAAGGATTAGGAAGATGATAATGTCTTATATCGAACAAGAAACTTGTATCATATTGGCTGTTAGTCCTGCAAATTCAGATTTGGCTACTTCTGATGCACTACAGATGGCTAGAGAGGCTGATCCAGCAGGTTCTCGAACAATTGGGGTAATTACAAAGCTAGATATAATGGACAAAGGTACTGATGCTCGCAAGTTTCTCCTTGGTAAAGTCGTGCCACTTCGTCTAGGTTATGTTGGCGTAGTGAATCGCAGTCAGGAGGATATCAATAAGAATCGGAGCATTGCAGAAGCACATGCATATGAGGAACAATTCTTCAATGATTATCCTATTCTGGAGCATCATATTAGAACGATTATCCCTAATTTGAGGGCTGAGCTAAATTCTCATTTGGTTGCTGTTGTAAAAGAGCTACATACGTATGGTGAGGTTATGGAATCAAAAGGGGAACAAGGAGCAGTTCTGTTGAATATTTTGAGAAGATACTGTGAAGCCTTTTCTGCTTTACTGGATGGGAAAAGTCAAGAGATGTCAACGAAGGAGTTGTCAGGGGGAGCCAGGATTCACTACATTTTTCAATCGATTTTTGTGAAAAGCTTGGAGCTTGTCACCGCCTTATTTTGCATGCAGGAAGTTGATCCATGTGAGGAACTCACTGAGGATGATATTCGAACAGCTATTCAAAATGCAGCTGGTCCTAGAAATGCTTTATTTGTGCCAGAGGTCCCATTTGAAGTTTTGGTTAGGAGACAAATTGGAAGGTTGTTGGACCCTAGCCTCCAGTGTTTGCGATTTGTCCATGAGGAACTAATACAGATGAGTCGTGATTGTGAAACAGTTGAGAGGCAAAGGTTTCCGATGTTGAGAAAGCGTATGGATGAAGTCATGGGAAAGTTTCTGCGTGATGGAGTAGAACCCGCTGAAAGAATGATAACAAACATTATTGAAATGGAGATGGATTGTATAAATTCTTCGCACCCAAAGTTTATTGGTGGGAACCAAGCTGCTGAAATTGCTATTCAGCAAGTGAGATCTTCAAAGGATGCTAATGGCGTTGAAAAGGATCCCACATCAGAGAAGAGCCAAAAATCTTTTGCAGGTTTGGCCAAGTCGGTTGTGAATGGTGTTTTGCCTAACCAGGGAAGTCAGTCGCAGTCTATTAATGAGGGACCATCTGCAGTTAATTCAACTGCAAGGTCATGGGGTATTTCATCCATATTCGGGAAGCTTAAATCATATGGAGGCGGTTTATCTGATGGAGCTCTTAGTGGAACTATGCATGATAGTGATCATATGCCCTCTATTATCCAACTGAGAAAACCACCACGCATCTTGAAGCCAGAAGAAGAACAAACAGAACGAGAAGCGGTGGAAATAATGGTCACCAAGTTACTCTTGGAATCTTATTATGACATTGTCAGAAAGAACATTCAAGACTTGGTTCCAAAAGTTATAATGCACCTTTTGGTCAATCATACAAAGAGGGAACTGCTTGGCACCTTTATGCAGGAACTTTACAGAGAGAAACATTTTGAAGAGTTGCTGCTCGAGCACGATGAAGTTGTTGTGAAAAGAAAACGGACCAGCGAGATGTCCCATGCCCTTCAGCAAGCTGTTCAGACGCTTGACGAGGTGGTAGCGGATGTGCCGTGCCGAAGTTCAAGCTCGGATGTTGGAATGCGCCTCTGTTGA

Network for GWHGAAZE026124

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00350.24	Dynamin_N	39	223	6.30E-55
PF01031.21	Dynamin_M	234	281	6.80E-16
PF01031.21	Dynamin_M	281	506	2.00E-61
PF02212.19	GED	625	715	3.50E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17065	DNM1L	TNF signaling pathway	map04668
		Mitophagy - yeast	map04139
		Apoptosis - fly	map04214
		Necroptosis	map04217
		NOD-like receptor signaling pathway	map04621

Gene Ontology

GO term	Ontology	Name
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.004
	SRR3591706	second leaf	19.896
	SRR3591707	mature leaf	27.265
	SRR3591708	Shoot apex	35.105
	SRR3591709	Stem	61.479
	SRR3591710	White floral bud	30.543
	SRR3591711	White flower	37.345
	SRR3591712	Green floral bud	23.232
	SRR3591713	Yellow flower	31.020
SRP173429	SRR8316895	Juvenile bud stage	30.864
	SRR8316896	Juvenile bud stage	43.111
	SRR8316897	Juvenile bud stage	22.123
	SRR8316894	Third green stage	16.806
	SRR8316900	Third green stage	35.601
	SRR8316901	Third green stage	35.326
	SRR8316898	Complete white stage	14.896
	SRR8316899	Complete white stage	48.003
	SRR8316903	Complete white stage	30.079
	SRR8316902	Silver flowering stage	13.617
	SRR8316904	Silver flowering stage	18.836
	SRR8316905	Silver flowering stage	9.034
	SRR8316906	Gold flowering stage	31.558
	SRR8316907	Gold flowering stage	30.934
	SRR8316908	Gold flowering stage	33.744
SRP132670	SRR6706286	Control	22.513
	SRR6706287	Light intensity 50%	25.850
	SRR6706288	Light intensity 20%	26.852
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.040
	CNS0095593	Slightly white alabastrum(diploid) 2	30.917
	CNS0095594	Slightly white alabastrum(diploid) 3	27.476
	CNS0095595	Whole white alabastrum(diploid) 2	23.733
	CNS0095596	Whole white alabastrum(diploid) 3	18.266
	CNS0095597	Whole white alabastrum(diploid) 4	20.302
	CNS0095598	Silvery flower (diploied) 1	39.262
	CNS0095599	Silvery flower (diploied) 2	35.279
	CNS0095600	Silvery flower (diploied) 3	25.910
	CNS0095601	Golden flower (diploid) 1	35.645
	CNS0095602	Golden flower (diploid) 2	32.376
	CNS0095603	Golden flower (diploid) 3	30.526
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.456
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.519
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.060
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.849
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.150
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.330
	CNS0095610	Silvery flower (tetraploid) 1	36.349
	CNS0095611	Silvery flower (tetraploid) 2	30.110
	CNS0095612	Silvery flower (tetraploid) 3	36.472
	CNS0095613	Golden flower (tetraploid) 1	21.017
	CNS0095614	Golden flower (tetraploid) 2	27.591
	CNS0095615	Golden flower (tetraploid) 3	20.302
CRA001975	CRR073297	Stem 1	45.383
	CRR073298	Stem 2	36.872
	CRR073299	Stem 3	25.687
	CRR073300	Leaf 1	40.779
	CRR073301	Leaf 2	34.173
	CRR073302	Leaf 3	21.650
	CRR073303	Juvenile bud 1	23.753
	CRR073304	Juvenile bud 2	17.446
	CRR073305	Juvenile bud 3	28.010
	CRR073306	Third green 1	6.760
	CRR073307	Third green 2	5.543
	CRR073308	Third green 3	8.559
	CRR073309	Second white 1	8.173
	CRR073310	Second white 2	10.543
	CRR073311	Second white 3	8.065
	CRR073312	Silver flowering 1	6.943
	CRR073313	Silver flowering 2	8.430
	CRR073314	Silver flowering 3	5.311
	CRR073315	Gold flowering 1	15.741
	CRR073316	Gold flowering 2	29.268
	CRR073317	Gold flowering 3	15.258
	CRR073318	Tawny withering 1	23.065
	CRR073319	Tawny withering 2	32.372
	CRR073320	Tawny withering 3	28.064