Gene detail

Detail information of GWHGAAZE026123

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267348.2	1.328E-115	PREDICTED: (+)-neomenthol dehydrogenase [Vitis vinifera]
COG	YP_008149897.1	3E-48	hypothetical protein SCE1572_17400
Swissprot	tr\|Q9M2E2\|SDR1_ARATH	8E-106	(+)-neomenthol dehydrogenase
trEMBL	tr\|D7UC32\|D7UC32_VITVI	5E-116	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI40297.3}
TAIR10	AT3G61220.1	6E-86	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	73789364	73791460	-
GWHAAZE00000007	mRNA	73789364	73791460	-
GWHAAZE00000007	exon	73789364	73789741	-
GWHAAZE00000007	exon	73790094	73790276	-
GWHAAZE00000007	exon	73790508	73790582	-
GWHAAZE00000007	exon	73791206	73791460	-
GWHAAZE00000007	CDS	73791206	73791460	-
GWHAAZE00000007	CDS	73790508	73790582	-
GWHAAZE00000007	CDS	73790094	73790276	-
GWHAAZE00000007	CDS	73789364	73789741	-

Transcript Sequence
>GWHTAAZE026157 ATGACTTTTAGGATTGCAGTTGTTACAGGGGGAAACAAAGGAATTGGATTAGAGATATGTAGGCAATTAGCTACAAATGATATAATTGTGGTACTAACAGCAAGAGATGAGAAGAGGGGTAATGAAGCTGTTAATAATCTCAATTCCTCTGGCCTATTAGACATATTTTTTCATCAGCTTGATGTCATGGATTCAACAAGTATTGATTCTCTAGTTGATTACATCAAGATCCAATTTGGCAAGCTTGACATATTGGTGAATAATGCAGGGGTAGCTGGAGTCATTGTGGATGCAGAGTCCTTCCCTAGTTTACAACTCCAGAGTGGTGGTAATGTAGGTGCACCATCTCACTTGGGACAAAAGGTTGCAATTCAAACTTATGAAACAGCAGAAGGGTGTATAAGGACAAATTATTATGGACCCAAGCAATTGACTCAAGCTCTTATTCCACTTCTGTTGGAATCTATTTCTCCAAGAGTTGTTAACATCTCTTCCAAGTTGGGGCAATTAAAGGAATTTTCAAATGAATGGGCAAGAAAGATACTAAGTGATGTTGATGGACTAACAGAGGAAAGAGTTGATGATTTTGTGCATTGCTTCTTAAAGGATGCTAAAGAGGATTTATTAGAGCAAAAAGGGTGGCCAAATATTCTCTCAGCTTACAAAGTCTCAAAAGCTGCACTTAATAGCCACACAAGGATTTTGGCTAAAAAGTTGCCATTGTTGTGCGTAAATGCAGTTACTCCTGGTTATGTTAAAACAGATATGAGCTTCTATCAAGGCAATATCACTGTTGAAGAAGGTGCAAAAGGCCCTCTCATGTTGGCTTTGATGCCTCATGGTGGGCCCTCTGGCCTCTTCTTCAATAGGATGGAAGAATCAAACTTTTGA

Network for GWHGAAZE026123

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	5	171	6.20E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15095	E1.1.1.208	Biosynthesis of secondary metabolites	map01110
K15095	E1.1.1.208	Monoterpenoid biosynthesis	map00902

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.295
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.901
	SRR3591708	Shoot apex	0.114
	SRR3591709	Stem	1.197
	SRR3591710	White floral bud	4.569
	SRR3591711	White flower	9.766
	SRR3591712	Green floral bud	1.298
	SRR3591713	Yellow flower	14.291
SRP173429	SRR8316895	Juvenile bud stage	1.673
	SRR8316896	Juvenile bud stage	3.266
	SRR8316897	Juvenile bud stage	1.556
	SRR8316894	Third green stage	0.105
	SRR8316900	Third green stage	0.964
	SRR8316901	Third green stage	2.623
	SRR8316898	Complete white stage	1.338
	SRR8316899	Complete white stage	3.777
	SRR8316903	Complete white stage	1.850
	SRR8316902	Silver flowering stage	3.735
	SRR8316904	Silver flowering stage	4.697
	SRR8316905	Silver flowering stage	2.223
	SRR8316906	Gold flowering stage	9.518
	SRR8316907	Gold flowering stage	8.474
	SRR8316908	Gold flowering stage	8.929
SRP132670	SRR6706286	Control	0.424
	SRR6706287	Light intensity 50%	0.867
	SRR6706288	Light intensity 20%	0.565
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.217
	CNS0095593	Slightly white alabastrum(diploid) 2	6.533
	CNS0095594	Slightly white alabastrum(diploid) 3	7.817
	CNS0095595	Whole white alabastrum(diploid) 2	8.418
	CNS0095596	Whole white alabastrum(diploid) 3	1.289
	CNS0095597	Whole white alabastrum(diploid) 4	6.449
	CNS0095598	Silvery flower (diploied) 1	4.832
	CNS0095599	Silvery flower (diploied) 2	5.105
	CNS0095600	Silvery flower (diploied) 3	3.996
	CNS0095601	Golden flower (diploid) 1	4.205
	CNS0095602	Golden flower (diploid) 2	2.835
	CNS0095603	Golden flower (diploid) 3	3.465
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.959
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.512
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.935
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.130
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.204
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.185
	CNS0095610	Silvery flower (tetraploid) 1	0.684
	CNS0095611	Silvery flower (tetraploid) 2	0.303
	CNS0095612	Silvery flower (tetraploid) 3	0.905
	CNS0095613	Golden flower (tetraploid) 1	1.696
	CNS0095614	Golden flower (tetraploid) 2	2.026
	CNS0095615	Golden flower (tetraploid) 3	0.325
CRA001975	CRR073297	Stem 1	0.165
	CRR073298	Stem 2	0.216
	CRR073299	Stem 3	0.744
	CRR073300	Leaf 1	0.427
	CRR073301	Leaf 2	0.449
	CRR073302	Leaf 3	0.547
	CRR073303	Juvenile bud 1	0.254
	CRR073304	Juvenile bud 2	0.311
	CRR073305	Juvenile bud 3	0.481
	CRR073306	Third green 1	0.067
	CRR073307	Third green 2	0.090
	CRR073308	Third green 3	0.067
	CRR073309	Second white 1	1.581
	CRR073310	Second white 2	0.491
	CRR073311	Second white 3	0.703
	CRR073312	Silver flowering 1	0.311
	CRR073313	Silver flowering 2	0.942
	CRR073314	Silver flowering 3	1.141
	CRR073315	Gold flowering 1	0.803
	CRR073316	Gold flowering 2	1.288
	CRR073317	Gold flowering 3	0.918
	CRR073318	Tawny withering 1	5.187
	CRR073319	Tawny withering 2	6.303
	CRR073320	Tawny withering 3	3.416