Gene detail

Detail information of GWHGAAZE026122

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACZ34296.1	1.1223E-142	broad substrate reductase/dehydrogenase [Artemisia annua]
COG	YP_003888420.1	2E-42	short-chain dehydrogenase/reductase SDR
Swissprot	tr\|Q9ZUH5\|SDR2B_ARATH	1E-103	Short-chain dehydrogenase/reductase 2b
trEMBL	tr\|D1MI43\|D1MI43_ARTAN	4E-143	Broad substrate reductase/dehydrogenase {ECO:0000313\|EMBL:ACZ34296.1}
TAIR10	AT2G24190.1	4E-79	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	73785633	73787213	-
GWHAAZE00000007	mRNA	73785633	73787213	-
GWHAAZE00000007	exon	73785633	73786010	-
GWHAAZE00000007	exon	73786097	73786285	-
GWHAAZE00000007	exon	73786419	73786493	-
GWHAAZE00000007	exon	73786580	73786823	-
GWHAAZE00000007	exon	73787176	73787213	-
GWHAAZE00000007	CDS	73787176	73787213	-
GWHAAZE00000007	CDS	73786580	73786823	-
GWHAAZE00000007	CDS	73786419	73786493	-
GWHAAZE00000007	CDS	73786097	73786285	-
GWHAAZE00000007	CDS	73785633	73786010	-

Transcript Sequence
>GWHTAAZE026156 ATGGAAGAGGCTACTACTACGAATTCAGCACATAAAAGGTGTGCTGTTGTAACCGGAGGAAACAAAGGAATTGGGCTTGAGATTTGTAGGGGTTTAGCATCAAATGGAATAAGAGTAATATTAACTGCTAGAGATGAGAAAAAGGGTATTAAAGCTGTTGAAGAACTTAAAGCCTGTGGACTAACTCATGTTCTTTTCCATCAACTTGATGTTAAAGATCCTTGTAGCATTGTTTCTTTGGCACAATTCATTAAAACCAATTTCAGAAAACTTGATATTCTGGTAAATAATGCAGGGGAAATTGGCATTGTTATGCATGTTGAAGCATTAAGAGCCTTTAAACATGGAGCAGGATTTGTGAAGGTGACCGATGAAAATGCACACTTGTTAGGTGGAATTATAGAGCAGACATATGAAATTGCAGAAGAGTGTCTCAAAACAAATTACTATGGAACCAAAAGAGTATCCGAAGCGCTTCTTCCTCTTCTTCAACTCTCCAATTCACCAAGAATAGTAAATATGTCCTCGGTTTATGGACAACTATCGTATATCCGCAATGAGAAGGTCAGAGAAGAGCTGGAAAATCTAGAAAACTTAACAGAAGAGAAAATAGACGAAATTTTGAATTGGTTTATGAGGGACTTGAAGGAGGATAAGTTGAAGGTTAACGGTTGGCCTATAACAGTATCGGCTTATAAGGTTTCAAAAGCTTTCATCAATGCTTATACAAGACTCTTAGCGAAGAAATTCCCAAATATACTTATCAATTGTGTACATCCTGGGTATGTTAGTACAGATATCACATGTCACATGGGGTACCTGACCGCTAACGAAGGTGCTAAAGCTCCAATAATGGTGGCTTTGTTGCCTAATGACGGTCCTTCTGGCGTCTACTTTGATGAGATGCGCATATCCACTTTTTGA

Network for GWHGAAZE026122

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	14	184	1.60E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15095	E1.1.1.208	Biosynthesis of secondary metabolites	map01110
K15095	E1.1.1.208	Monoterpenoid biosynthesis	map00902

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.233
	SRR3591707	mature leaf	0.689
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.014
	SRR3591712	Green floral bud	0.269
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.134
	SRR8316896	Juvenile bud stage	0.137
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.195
	SRR8316900	Third green stage	1.302
	SRR8316901	Third green stage	0.940
	SRR8316898	Complete white stage	0.472
	SRR8316899	Complete white stage	0.906
	SRR8316903	Complete white stage	0.335
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.074
	SRR8316905	Silver flowering stage	0.070
	SRR8316906	Gold flowering stage	0.127
	SRR8316907	Gold flowering stage	0.136
	SRR8316908	Gold flowering stage	0.181
SRP132670	SRR6706286	Control	0.084
	SRR6706287	Light intensity 50%	0.139
	SRR6706288	Light intensity 20%	0.300
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.356
	CNS0095593	Slightly white alabastrum(diploid) 2	0.810
	CNS0095594	Slightly white alabastrum(diploid) 3	1.228
	CNS0095595	Whole white alabastrum(diploid) 2	0.695
	CNS0095596	Whole white alabastrum(diploid) 3	1.052
	CNS0095597	Whole white alabastrum(diploid) 4	2.342
	CNS0095598	Silvery flower (diploied) 1	0.047
	CNS0095599	Silvery flower (diploied) 2	0.342
	CNS0095600	Silvery flower (diploied) 3	0.137
	CNS0095601	Golden flower (diploid) 1	0.188
	CNS0095602	Golden flower (diploid) 2	0.501
	CNS0095603	Golden flower (diploid) 3	0.094
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.461
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.265
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.028
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.211
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.938
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.439
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.210
	CNS0095612	Silvery flower (tetraploid) 3	0.037
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.202
	CNS0095615	Golden flower (tetraploid) 3	0.179
CRA001975	CRR073297	Stem 1	0.039
	CRR073298	Stem 2	0.075
	CRR073299	Stem 3	0.093
	CRR073300	Leaf 1	0.262
	CRR073301	Leaf 2	0.160
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.069
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.177
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.120
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.058
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.278
	CRR073316	Gold flowering 2	1.181
	CRR073317	Gold flowering 3	0.168
	CRR073318	Tawny withering 1	0.150
	CRR073319	Tawny withering 2	0.495
	CRR073320	Tawny withering 3	0.238