Gene detail

Detail information of GWHGAAZE026121

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011080213.1	0	PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Sesamum indicum]
Swissprot	tr\|Q6K687\|C3H18_ORYSJ	0	Zinc finger CCCH domain-containing protein 18
trEMBL	tr\|A0A0A0LSP5\|A0A0A0LSP5_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN63006.1}
TAIR10	AT2G24830.1	2E-119	zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	73777970	73784200	+
GWHAAZE00000007	mRNA	73777970	73784200	+
GWHAAZE00000007	exon	73777970	73778095	+
GWHAAZE00000007	exon	73779390	73779704	+
GWHAAZE00000007	exon	73782649	73782709	+
GWHAAZE00000007	exon	73783173	73784200	+
GWHAAZE00000007	CDS	73777970	73778095	+
GWHAAZE00000007	CDS	73779390	73779704	+
GWHAAZE00000007	CDS	73782649	73782709	+
GWHAAZE00000007	CDS	73783173	73784200	+

Transcript Sequence
>GWHTAAZE026155 ATGGCGAACGACGAAGGGAGAGCTCTAGAAGGACAGCTGGAGCTCCAATTACAAGAACAGAGAGACTCACTTTCTGCTGTAAACCAAGCCCTAGCATCTGATTCTACCAATTCCGAACTTCTTTCGGTTCACGAGGATCTTGTTCAGGCTATTAAAGATGCGGAGGAAGGGCTCTTTCAGTTGAAACGTGCAAGGTTGTTGCAAGAGGCTGATTTGGCTCTACAAAGTACCAATGATAATACTGCTGAGGATGTCAAGGTGGAGCCAATTGATCCAACAGAAGTTGAAGCAGAACCACTTGAGGATCAAAGTTACTCTGTTGGATCAAAATGTAGATTTCGCCATATTGATGGACGATGGTACAATGGTCTGATTGTTGGGTTGGAAGGGTCGAATGCTGCAAAAATTTCTTACCTAACACCGACATCCGAAAACATGTTGATGTGCAAGTTCTTTCTACAGCAACGATGTCGATTTGGTACTAACTGCCGCTTATCACATGGGGTAGACGTCCCATTATCTCGCTTGAAGAAATATATCCCCACAATGTGGGACCAATCGCTGGTGGGGTCCAGTATTTGGGCTGCCTCGGAGGGGAAATCTGGTATTTGGCGGGTAGCTGAGCTCGTATCATGGGACGACAATCTTGGGGTGGGGCAGGTTGTTTTCCGAGACGATGGAACCTCTTCGAAAGTTGGGTCCGAAGCTATTTCACTATCCGAATATGCTCAAATGAGTGACGAAGATGAAAACTACTCAACCTCAGACCAATCTGATTCTAGTGATTATGAAGAAGATAGCCCCAAGGGTGTCGGGTACCTTGAAAGCTCTACCCTGCAGAGGGGCGTCCAAACCGAAACAGCCATTTTTGCCCAATGGGAGAATCACACCAGAGGCATAGCTTCAAAGATGATGGCCAACATGGGTTACACCGAAGGAATGGGTTTGGGTGTATCGGGTCAAGGAATGCTAAACCCCATTTCCGTGAAAGTCCTTCCACCGAAGCAATCCCTTGAATATGCGCTCGAATCTAAGGAAAACAGAGAGAAGAAAGAAAAAGAAAACCTGGGGAAGAAACGAAGCCGAGGAGGGAAAAGAAAACGCGATAAAAAGTTTGCGGCCGCAGCTAGGGCTAGAAAAGCTGAGGAGGAATCAAACCTGGACCCGGACGTTTTTACCCTTATCAACACGCAACTTGCTAAGCATGGTGAAGCTTTGAATGGAGGGTCCCGGTCCTTGGGGAAGAAGCAATGGAGTGGTGGTGGCGGAGGCAGCGGCGGTGGTGAAGGGAAGAGACAAGATAGGCGGGCCCTAGTTGCTTATGATGATGAGATGAAAGAGTTGAGGGCCCGGATTGAGAAGCTTGAAGAAATGGCGGTAAGGAACAAGAATGAGAAGGCGGTATATGATGCGGCAACAAGGAAGCTGAACGAGACCCGGAAAGCTTTGGCTGAGGCGGAGGCGGCTCGTGCTTCTGCTTCGAGTGCAGTTGCTAGCAAAGAAAGAGAGAAGAGATGGCTTAAGTTTTAA

Network for GWHGAAZE026121

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18044.2	zf-CCCH_4	148	168	2.30E-06
PF01585.24	G-patch	297	338	4.90E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.356
	SRR3591706	second leaf	16.264
	SRR3591707	mature leaf	19.382
	SRR3591708	Shoot apex	26.385
	SRR3591709	Stem	23.695
	SRR3591710	White floral bud	28.639
	SRR3591711	White flower	33.123
	SRR3591712	Green floral bud	21.398
	SRR3591713	Yellow flower	32.830
SRP173429	SRR8316895	Juvenile bud stage	17.188
	SRR8316896	Juvenile bud stage	24.321
	SRR8316897	Juvenile bud stage	9.693
	SRR8316894	Third green stage	9.861
	SRR8316900	Third green stage	23.628
	SRR8316901	Third green stage	27.853
	SRR8316898	Complete white stage	16.472
	SRR8316899	Complete white stage	37.024
	SRR8316903	Complete white stage	22.606
	SRR8316902	Silver flowering stage	17.632
	SRR8316904	Silver flowering stage	23.531
	SRR8316905	Silver flowering stage	12.421
	SRR8316906	Gold flowering stage	42.478
	SRR8316907	Gold flowering stage	37.480
	SRR8316908	Gold flowering stage	42.908
SRP132670	SRR6706286	Control	32.439
	SRR6706287	Light intensity 50%	33.351
	SRR6706288	Light intensity 20%	32.715
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.167
	CNS0095593	Slightly white alabastrum(diploid) 2	28.928
	CNS0095594	Slightly white alabastrum(diploid) 3	26.860
	CNS0095595	Whole white alabastrum(diploid) 2	25.815
	CNS0095596	Whole white alabastrum(diploid) 3	21.458
	CNS0095597	Whole white alabastrum(diploid) 4	23.295
	CNS0095598	Silvery flower (diploied) 1	34.731
	CNS0095599	Silvery flower (diploied) 2	33.404
	CNS0095600	Silvery flower (diploied) 3	38.188
	CNS0095601	Golden flower (diploid) 1	30.140
	CNS0095602	Golden flower (diploid) 2	39.662
	CNS0095603	Golden flower (diploid) 3	38.006
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.194
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.424
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.453
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.609
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.031
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.707
	CNS0095610	Silvery flower (tetraploid) 1	53.014
	CNS0095611	Silvery flower (tetraploid) 2	41.597
	CNS0095612	Silvery flower (tetraploid) 3	47.109
	CNS0095613	Golden flower (tetraploid) 1	46.800
	CNS0095614	Golden flower (tetraploid) 2	57.090
	CNS0095615	Golden flower (tetraploid) 3	38.989
CRA001975	CRR073297	Stem 1	26.089
	CRR073298	Stem 2	28.078
	CRR073299	Stem 3	25.959
	CRR073300	Leaf 1	31.136
	CRR073301	Leaf 2	30.289
	CRR073302	Leaf 3	27.332
	CRR073303	Juvenile bud 1	23.894
	CRR073304	Juvenile bud 2	23.949
	CRR073305	Juvenile bud 3	23.769
	CRR073306	Third green 1	20.109
	CRR073307	Third green 2	18.094
	CRR073308	Third green 3	22.131
	CRR073309	Second white 1	12.546
	CRR073310	Second white 2	20.391
	CRR073311	Second white 3	21.089
	CRR073312	Silver flowering 1	24.532
	CRR073313	Silver flowering 2	19.453
	CRR073314	Silver flowering 3	21.043
	CRR073315	Gold flowering 1	27.457
	CRR073316	Gold flowering 2	32.078
	CRR073317	Gold flowering 3	17.867
	CRR073318	Tawny withering 1	25.125
	CRR073319	Tawny withering 2	31.053
	CRR073320	Tawny withering 3	27.601