Gene detail

Detail information of GWHGAAZE026111

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006450262.1	0	hypothetical protein CICLE_v10007357mg [Citrus clementina]
Swissprot	tr\|Q9LEB3\|RBP47_NICPL	0.000000002	Polyadenylate-binding protein RBP47
trEMBL	tr\|A0A067FVD7\|A0A067FVD7_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO67407.1}
TAIR10	AT5G25060.1	0	RNA recognition motif (RRM)-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	73641819	73658820	-
GWHAAZE00000007	mRNA	73641819	73658820	-
GWHAAZE00000007	exon	73658814	73658820	-
GWHAAZE00000007	exon	73657743	73657837	-
GWHAAZE00000007	exon	73657499	73657634	-
GWHAAZE00000007	exon	73657284	73657329	-
GWHAAZE00000007	exon	73648960	73649293	-
GWHAAZE00000007	exon	73647241	73647357	-
GWHAAZE00000007	exon	73646950	73647115	-
GWHAAZE00000007	exon	73646318	73646430	-
GWHAAZE00000007	exon	73646020	73646091	-
GWHAAZE00000007	exon	73645115	73645336	-
GWHAAZE00000007	exon	73644642	73644700	-
GWHAAZE00000007	exon	73644317	73644401	-
GWHAAZE00000007	exon	73644038	73644175	-
GWHAAZE00000007	exon	73643713	73643937	-
GWHAAZE00000007	exon	73642462	73643264	-
GWHAAZE00000007	exon	73641819	73642011	-
GWHAAZE00000007	CDS	73658814	73658820	-
GWHAAZE00000007	CDS	73657743	73657837	-
GWHAAZE00000007	CDS	73657499	73657634	-
GWHAAZE00000007	CDS	73657284	73657329	-
GWHAAZE00000007	CDS	73648960	73649293	-
GWHAAZE00000007	CDS	73647241	73647357	-
GWHAAZE00000007	CDS	73646950	73647115	-
GWHAAZE00000007	CDS	73646318	73646430	-
GWHAAZE00000007	CDS	73646020	73646091	-
GWHAAZE00000007	CDS	73645115	73645336	-
GWHAAZE00000007	CDS	73644642	73644700	-
GWHAAZE00000007	CDS	73644317	73644401	-
GWHAAZE00000007	CDS	73644038	73644175	-
GWHAAZE00000007	CDS	73643713	73643937	-
GWHAAZE00000007	CDS	73642462	73643264	-
GWHAAZE00000007	CDS	73641819	73642011	-

Transcript Sequence
>GWHTAAZE026145 ATGAAAGTTCAAGTACTTGATGAAAAGATGAGTTCTTTCTCTATTACACGGAAGAAAACACCTTTCCAGAAGCACAGAGAAGAGGAAGAGGCGAAGAAAAAGCGAGCGGAGGATGAAACAGCTCGTCTATATGCAGAGTTTGTTGAGTCATTTCAGGGAGATACTGCACCAGGGTCAAAGACCTTTGTTCGAGGAGGAGTTATCAATCCCAATGAGAAGTTGAAAAATGATTCTGAAGGTGGAAATTCCAAAGATGGGGTATCTGGTTCAAAGAAGGGGAGTAGGTATGTTCCTTCTTTCTTACCACCTCCTATGGCAACCAAGGGAAAGGATTATGAGAAGAAGGCAAGTGTTTATGACAGAAGTTATAACAATTTCTTGTTTTTTCTCCTGTGGGTTAGCTTGGTTTTGGACATATTTTTTTCTTGTTATTTAGTCCCAAGTTCTTTATGTTTGTTTGCCCAGAAGGAGGAGGAAAGGCCAAAGGAAAAAGAGAAAGTGAAATCACGCAACATTGATCATTTCATGGAGGAGTTGAAGCACGAGCAAGAGATGAGGGAAAGGAGAAACCAAGAGCGTGAACACTGGCATGATGGACGTCATACAGATACTTCTACTACGTCTAGCCGATTTGACGAACTACCTGATGATTTTGATCCGAGTGGAAAGCCAGGCTCATTTGATGATGGGGATCCACAAACCACAAATCTTTATGTGGGGAATCTCTCGCCTCAGGTGGATGAGAATTTCCTTTTGCGGACTTTTGGAAGATTTGGACCTATTGCTAGTGTTAAAATAATGTGGCCTCGGACTGAGGAGGAGCGGAGACGGCAAAGAAATTGCGGTTTTGTAGCTTTCATGAACAGGGCTGATGGACAGGCTGCAAAAGATGAGATGCAAGGAGTTATTGTTTATGAATATGAGCTGAAAATTGGGTGGGGTAAATCTGTCTCTCTTCCATCACAAGCACTGCCTGCTCCTCCCCCTGGACATATGGCCATCAGGAGTAAAGAGGGTGCGACTGTTATCTTATCTGGTCCATCGGGCCCTCCGGTTACTTCAGTGCCTAGCCAAAACTCCGAGCTGGTTCTTACACCAAATGTACCTGATATAACTGTTGGTCCACCTGAGGATGATCATCTTCGGAATGTAATTGACACAATGGCTCTCTATGTTCTTGATGGGGGTTGTGCTTTTGAGCAAGCTATAATGGAGAGAGGTCGTGGGAATCCTCTTTTTAATTTCTTGTTTGAACTTGCCTCGAAAGAGCATACTTACTATGTTTGGAGGTTGTATTCCTTTGCTCAGGGTGATACACTTCAGCGGTGGCGATTGGAGCCTTTCATCATGATAACTGGTAGTGGGAGATGGATACCGCCTCCTCTGCCAAAACCAAAAAGCCCAGAGCATGAAAAGGAGTCTGGCGCTACATATGCAGCTGGAAGGAGCAGGCGTGTGGAGCCCGAACGAACTCTGACTGACGCACAGAGAGATGAATTTGAGGATATGCTACGTGCTTTGACATTAGAAAGAAGTCAGATAAAGGATGCTATGGGTTTTGCATTAGACAATGCTGATGCTGCTGGAGAGATAGTTGAAGTTTTGACCGAGTCTTTGACACTTAAAGAAACTCCCATTCCGACTAAAGTTGCCAGGCTCATGCTTGTCTCAGATATTCTTCACAATAGTAGTGCTCCAGTAAAGAATGCATCAGCTTACCGGACCAAATTTGAAGCAACTCTTCCAGACATAATGGAAAGCTTTAATGACTTGTACTGTAGTATCACAGGAAGAATCACTGCCGAGGCGCTTAAGGAACGAGTTCTGAAAGTTCTTCAAGTTTGGGCCGATTGGTTTCTATTTTCGGATGCATATGTGAACGGTTTACGAGCTACTTTTCTTAGATCCGGGAACTCAGGTGTGATCTCTTTTCACTCTATCTGTGGCGATGCACCAGAGCTAGAAAAGAAACCTAGCTCTGACGATACAAGTGATGGAGTAAAAACAAACCAAGATGCGGCATTGGCAATGGGAAAAGGAGCAGCCATGCAAGAGCTATTAAGTCTTCCCCTTGCTGAGCTAGAAAGACGATGCAGACACAATGGCTTATCTTTAGTTGGTGGTAGAGAAACGATGGTTGCTCGATTACTTCATTTGGAAGATGCGGAGAAACAGAGGGGATTTGAACTAAATGATGACTTGAAGTATCCTCAGAGCCATTCAAGTTCCAGTAGATATCCAAGTGGCCAAAAAGAAAAAAATATTGAAATGGAACCGGTGGGATTGTCAGGATGGAATCGATATGGGGAAGATGAGATTCCATCGCAAGGCAAAGGGCCTGTATCTCTGCAACCAAACATTCCTATTCCACAGCCTGAACTGAAAGCCTTCACAAATAAAGGGAAAAATGACCCCGTTTTGCCTTCCTCGAAGTGGGCAAGAGAGGAGGATGAAAGTGAACCTGAACAAAAGAGAAGTTCTAAGGATCTGGGTTTAACTTACTCGTCTTCGGGGAGTGAGGATGCTGGTGATGGTTTCAGTAAGACTGAAGAGACAGAGCTTGCAACTGATTCAAGCATTCCAGTACAACACGAGAGTGGAATGAGTGAAGAACAGAGACAAAAGTTAAGACGCCTTGAGGTTGCTTTGATGGAATATCGTGAGCTCCTTGAAGAGCGAGGAGTTCAAAATCCGGAGGAAATTGAGAGGAAAGTTGCAATCCAGCAGAAACGGCTTAAATCTGAATATGGTTTTTTGGATTCTAATGAAGACGCTCCAAGCAACAGTGAGTTTGCATTTTCATTTTGTTGA

Network for GWHGAAZE026111

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	237	309	6.10E-11
PF01805.21	Surp	382	434	1.70E-15
PF04818.14	CID	499	627	1.90E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12842	SR140	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0006396	biological_process	RNA processing
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.940
	SRR3591706	second leaf	15.092
	SRR3591707	mature leaf	16.555
	SRR3591708	Shoot apex	26.652
	SRR3591709	Stem	21.974
	SRR3591710	White floral bud	24.901
	SRR3591711	White flower	30.194
	SRR3591712	Green floral bud	21.994
	SRR3591713	Yellow flower	27.581
SRP173429	SRR8316895	Juvenile bud stage	15.145
	SRR8316896	Juvenile bud stage	22.549
	SRR8316897	Juvenile bud stage	9.019
	SRR8316894	Third green stage	9.483
	SRR8316900	Third green stage	22.091
	SRR8316901	Third green stage	22.256
	SRR8316898	Complete white stage	7.993
	SRR8316899	Complete white stage	21.093
	SRR8316903	Complete white stage	17.434
	SRR8316902	Silver flowering stage	12.346
	SRR8316904	Silver flowering stage	17.186
	SRR8316905	Silver flowering stage	7.626
	SRR8316906	Gold flowering stage	25.907
	SRR8316907	Gold flowering stage	24.678
	SRR8316908	Gold flowering stage	26.517
SRP132670	SRR6706286	Control	16.811
	SRR6706287	Light intensity 50%	19.819
	SRR6706288	Light intensity 20%	19.758
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.401
	CNS0095593	Slightly white alabastrum(diploid) 2	13.047
	CNS0095594	Slightly white alabastrum(diploid) 3	11.041
	CNS0095595	Whole white alabastrum(diploid) 2	12.660
	CNS0095596	Whole white alabastrum(diploid) 3	10.067
	CNS0095597	Whole white alabastrum(diploid) 4	10.612
	CNS0095598	Silvery flower (diploied) 1	19.633
	CNS0095599	Silvery flower (diploied) 2	14.135
	CNS0095600	Silvery flower (diploied) 3	26.159
	CNS0095601	Golden flower (diploid) 1	15.270
	CNS0095602	Golden flower (diploid) 2	26.483
	CNS0095603	Golden flower (diploid) 3	26.818
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.508
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.978
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.018
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.303
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.431
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.987
	CNS0095610	Silvery flower (tetraploid) 1	30.482
	CNS0095611	Silvery flower (tetraploid) 2	27.745
	CNS0095612	Silvery flower (tetraploid) 3	27.224
	CNS0095613	Golden flower (tetraploid) 1	14.817
	CNS0095614	Golden flower (tetraploid) 2	23.965
	CNS0095615	Golden flower (tetraploid) 3	26.454
CRA001975	CRR073297	Stem 1	29.630
	CRR073298	Stem 2	27.409
	CRR073299	Stem 3	21.966
	CRR073300	Leaf 1	27.511
	CRR073301	Leaf 2	22.736
	CRR073302	Leaf 3	17.513
	CRR073303	Juvenile bud 1	17.471
	CRR073304	Juvenile bud 2	13.618
	CRR073305	Juvenile bud 3	22.213
	CRR073306	Third green 1	9.193
	CRR073307	Third green 2	6.235
	CRR073308	Third green 3	9.439
	CRR073309	Second white 1	8.704
	CRR073310	Second white 2	12.473
	CRR073311	Second white 3	14.494
	CRR073312	Silver flowering 1	10.309
	CRR073313	Silver flowering 2	11.788
	CRR073314	Silver flowering 3	10.225
	CRR073315	Gold flowering 1	8.391
	CRR073316	Gold flowering 2	15.662
	CRR073317	Gold flowering 3	6.562
	CRR073318	Tawny withering 1	19.634
	CRR073319	Tawny withering 2	16.151
	CRR073320	Tawny withering 3	17.560