Gene detail

Detail information of GWHGAAZE026075

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP18793.1	6.3866E-103	unnamed protein product [Coffea canephora]
COG	YP_001958461.1	1E-20	hypothetical protein Aasi_1443
Swissprot	tr\|Q0V7T5\|Y1864_ARATH	4E-65	Probable receptor-like protein kinase At1g80640 (Precursor)
trEMBL	tr\|A0A068VGI3\|A0A068VGI3_COFCA	2E-103	Coffea canephora DH200=94 genomic scaffold, scaffold_288 {ECO:0000313\|EMBL:CDP18793.1}
TAIR10	AT2G25220.1	7E-62	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	72885010	72889888	+
GWHAAZE00000007	mRNA	72885010	72889888	+
GWHAAZE00000007	exon	72885010	72885187	+
GWHAAZE00000007	exon	72885597	72885847	+
GWHAAZE00000007	exon	72885926	72886058	+
GWHAAZE00000007	exon	72886318	72886381	+
GWHAAZE00000007	exon	72886470	72886566	+
GWHAAZE00000007	exon	72888779	72889888	+
GWHAAZE00000007	CDS	72885010	72885187	+
GWHAAZE00000007	CDS	72885597	72885847	+
GWHAAZE00000007	CDS	72885926	72886058	+
GWHAAZE00000007	CDS	72886318	72886381	+
GWHAAZE00000007	CDS	72886470	72886566	+
GWHAAZE00000007	CDS	72888779	72889888	+

Transcript Sequence
>GWHTAAZE026109 ACTCAAGAGGGAACTGAGAATCATAGAGAAATGGATTCAAACAAGAAAATGATTTTAGCACTCATCGTTGTTTCCTCTGCAATGGGTACTTTCATATTGTCTATGTGTTGTTTGTTGATTTATCTCAGAAACAACATTCACAAAAAATCCCACCAGGAGAAATCCGCCCATAGCTCAGATGATTTGGAAGGGATTACAGTATCTACATTTATGGATAAACAAAGTTCCTTGAAGATGAATTCCAAAAGGGTCCCTGTGTCTTTAATGGACTATAAATTACTAGAAACAGCAACAAACAATTTTAGCGAAAGTGATATTTTGGGTAAGGGGGGATTTGGATGTGTATACAAGGCTCAGTTGGAAGAGAATTTACATGCTGCTGTAAAGAGACTAGTTGATGGAAGTGTGTCCGCCATTACAGAATTTGAGAATGAGGTGCATTTGTTGAGTAAAATGCAGCATCCGAATATAATTTCTTTCTTAGGTTATAGCATTCATGGAGAAACTAGGCTTCTTGTTTATGAATTGATGGAGAATGGATCTCTTGAATCTCAATTGCACGGACCTTCTCATGGATCAGCTTTACCATGGCATCTCAGGATGAAAATAGCTCTTGATATAGCAAGAGGATTAGAATATTTGCACGAGCACTGCAACCCACAAGTTATCCATAGAGATCTGAAAACATCCAATATTCTCCTAGATTCCAGCTTCAATGCCAAGACCACAAAATCTGATTCAAGGCAGAAAAAAGTTGCTTTTATGCCAACTGTTTCTGTTCAATCTTCTCCTCCCATTATTCCCATCATTTCCACCTCTGATCCCCCCACTAATCATGCCAATACAAACCTTGATCATAGTCCTTCTAAGTTTGTTTCTGTTAGTCATAACAGTCAATCCAATCCCGTTCAAAGTTCTGATTCTGCAGAACATACTAATGCTTCTGAAACCAATTCCCACAAAGCAGTTCTGCCATCTAGCAATTCTTCTTTCACTCAACATAGCCCTTCCCCTTGCTTGAATAGATCCCTCACCAACCAATCTGTTACCTTATCTAACTCTGTTGATAATGATTGGGATGGCAGGCCTCTTCCACAATTCAGAACACACTCTATGAGATCTTCACAGTCCAATTATGGCATATCAACATCTGACTCCCACACTCAACAATTCACTAGATCTAGACATAATAATAAGTACTCTCCTCTTAGTGAGCATTTGTTAGATGATGATGGTGATGGTGAAGCTTGGGATCATTCTTCAGAAGAGAATTATATTGAGAATCAAGAGCATTTTAATGACTGTAGTGGCTTTTACTCACTTGCAAACTCCAACCAATTCATAGCAGTCCATAGGCCTCCAGTGCTCAATGTCCAGGAGGCTCTTAATTGGGAAAATATGGCTGATGATGAACCTTTCCAATCATGGGAAGCTAGAGCTGATGCAGAATTTGAAGCAGCTATAGCCAAGAACAATGATGAAGAAGGTATTGTCTCTCCACCACATGGCAACTCTCATATTTCCATATCTAGCCATGGCTCCACCTCAAAAGGTGGATTAGAGTATGTTCCCTCTCCTGTTCAAACAAGAGCACAAAGGCAGAAGAAAGGAACAACTCTTTCTTTAAACAAGAAAAATAAATTGAAGAAAGCTTCAAGTAGAGAAAAGAAGGAAGTTGAAGCTGCTGCACCAGGAAAACCTCCTAAAGAAGCTCAATCTAATTCCCTTTCTTCTTCCCAACCTCTATATCAATGGCAAGTCCATTTGCAGGACAAGAAGAAAAGAGAAGAGATTGCATTAGTGGATCAATCAGCCAATGTAGCAAAAACATAG

Network for GWHGAAZE026075

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	102	239	1.30E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-X

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.122
	SRR3591706	second leaf	7.484
	SRR3591707	mature leaf	4.996
	SRR3591708	Shoot apex	11.094
	SRR3591709	Stem	3.579
	SRR3591710	White floral bud	10.762
	SRR3591711	White flower	11.884
	SRR3591712	Green floral bud	1.853
	SRR3591713	Yellow flower	4.117
SRP173429	SRR8316895	Juvenile bud stage	5.359
	SRR8316896	Juvenile bud stage	5.404
	SRR8316897	Juvenile bud stage	3.998
	SRR8316894	Third green stage	1.851
	SRR8316900	Third green stage	2.181
	SRR8316901	Third green stage	2.558
	SRR8316898	Complete white stage	1.474
	SRR8316899	Complete white stage	3.304
	SRR8316903	Complete white stage	2.134
	SRR8316902	Silver flowering stage	3.175
	SRR8316904	Silver flowering stage	5.084
	SRR8316905	Silver flowering stage	3.335
	SRR8316906	Gold flowering stage	8.722
	SRR8316907	Gold flowering stage	13.193
	SRR8316908	Gold flowering stage	12.712
SRP132670	SRR6706286	Control	0.236
	SRR6706287	Light intensity 50%	0.358
	SRR6706288	Light intensity 20%	0.311
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.858
	CNS0095593	Slightly white alabastrum(diploid) 2	1.837
	CNS0095594	Slightly white alabastrum(diploid) 3	2.027
	CNS0095595	Whole white alabastrum(diploid) 2	2.754
	CNS0095596	Whole white alabastrum(diploid) 3	0.659
	CNS0095597	Whole white alabastrum(diploid) 4	1.363
	CNS0095598	Silvery flower (diploied) 1	4.556
	CNS0095599	Silvery flower (diploied) 2	5.077
	CNS0095600	Silvery flower (diploied) 3	2.352
	CNS0095601	Golden flower (diploid) 1	5.024
	CNS0095602	Golden flower (diploid) 2	2.141
	CNS0095603	Golden flower (diploid) 3	2.319
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.268
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.083
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.225
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.038
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.736
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.698
	CNS0095610	Silvery flower (tetraploid) 1	5.242
	CNS0095611	Silvery flower (tetraploid) 2	2.162
	CNS0095612	Silvery flower (tetraploid) 3	18.727
	CNS0095613	Golden flower (tetraploid) 1	3.868
	CNS0095614	Golden flower (tetraploid) 2	1.193
	CNS0095615	Golden flower (tetraploid) 3	2.124
CRA001975	CRR073297	Stem 1	1.940
	CRR073298	Stem 2	2.000
	CRR073299	Stem 3	0.313
	CRR073300	Leaf 1	0.632
	CRR073301	Leaf 2	1.079
	CRR073302	Leaf 3	0.216
	CRR073303	Juvenile bud 1	0.399
	CRR073304	Juvenile bud 2	0.167
	CRR073305	Juvenile bud 3	0.082
	CRR073306	Third green 1	0.864
	CRR073307	Third green 2	1.190
	CRR073308	Third green 3	0.832
	CRR073309	Second white 1	2.998
	CRR073310	Second white 2	2.776
	CRR073311	Second white 3	3.072
	CRR073312	Silver flowering 1	0.357
	CRR073313	Silver flowering 2	0.649
	CRR073314	Silver flowering 3	1.157
	CRR073315	Gold flowering 1	0.643
	CRR073316	Gold flowering 2	2.298
	CRR073317	Gold flowering 3	0.486
	CRR073318	Tawny withering 1	1.631
	CRR073319	Tawny withering 2	1.538
	CRR073320	Tawny withering 3	1.973