Detail information of GWHGAAZE026059


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002275626.10PREDICTED: tryptophan--tRNA ligase, cytoplasmic isoform X2 [Vitis vinifera]
COGYP_255155.12E-107tryptophanyl-tRNA synthetase
trEMBLtr|E0CTG2|E0CTG2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI21877.3}
TAIR10AT3G04600.30Nucleotidylyl transferase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7257580772583507-
GWHAAZE00000007mRNA7257580772583507-
GWHAAZE00000007exon7257580772575929-
GWHAAZE00000007exon7257616872576326-
GWHAAZE00000007exon7257648572576553-
GWHAAZE00000007exon7257670072576771-
GWHAAZE00000007exon7257736872577448-
GWHAAZE00000007exon7257774772577839-
GWHAAZE00000007exon7257822772578313-
GWHAAZE00000007exon7258058772580652-
GWHAAZE00000007exon7258083372580884-
GWHAAZE00000007exon7258167572581860-
GWHAAZE00000007exon7258248472582603-
GWHAAZE00000007exon7258319972583507-
GWHAAZE00000007five_prime_UTR7258345072583507-
GWHAAZE00000007CDS7258319972583449-
GWHAAZE00000007CDS7258248472582603-
GWHAAZE00000007CDS7258167572581860-
GWHAAZE00000007CDS7258083372580884-
GWHAAZE00000007CDS7258058772580652-
GWHAAZE00000007CDS7257822772578313-
GWHAAZE00000007CDS7257774772577839-
GWHAAZE00000007CDS7257736872577448-
GWHAAZE00000007CDS7257670072576771-
GWHAAZE00000007CDS7257648572576553-
GWHAAZE00000007CDS7257616872576326-
GWHAAZE00000007CDS7257580772575929-
Transcript Sequence

Network for GWHGAAZE026059

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00579.26tRNA-synt_1b973822.30E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01867WARS, trpS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006436biological_processtryptophanyl-tRNA aminoacylation
GO:0000166molecular_functionnucleotide binding
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0004830molecular_functiontryptophan-tRNA ligase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf57.519
SRR3591706second leaf42.981
SRR3591707mature leaf21.574
SRR3591708Shoot apex54.180
SRR3591709Stem36.852
SRR3591710White floral bud47.251
SRR3591711White flower54.196
SRR3591712Green floral bud50.469
SRR3591713Yellow flower52.758
SRP173429 SRR8316895Juvenile bud stage 31.635
SRR8316896Juvenile bud stage 39.120
SRR8316897Juvenile bud stage 20.113
SRR8316894Third green stage 15.911
SRR8316900Third green stage 46.522
SRR8316901Third green stage 44.389
SRR8316898Complete white stage 22.739
SRR8316899Complete white stage 53.795
SRR8316903Complete white stage 34.404
SRR8316902Silver flowering stage30.605
SRR8316904Silver flowering stage35.810
SRR8316905Silver flowering stage17.284
SRR8316906Gold flowering stage 59.966
SRR8316907Gold flowering stage 57.323
SRR8316908Gold flowering stage 63.365
SRP132670SRR6706286Control40.705
SRR6706287Light intensity 50%45.520
SRR6706288Light intensity 20%47.565
CNP0000432CNS0095592Slightly white alabastrum(diploid) 129.287
CNS0095593Slightly white alabastrum(diploid) 230.855
CNS0095594Slightly white alabastrum(diploid) 325.818
CNS0095595Whole white alabastrum(diploid) 226.362
CNS0095596Whole white alabastrum(diploid) 323.991
CNS0095597Whole white alabastrum(diploid) 418.534
CNS0095598Silvery flower (diploied) 128.078
CNS0095599Silvery flower (diploied) 223.247
CNS0095600Silvery flower (diploied) 336.553
CNS0095601Golden flower (diploid) 123.559
CNS0095602Golden flower (diploid) 233.690
CNS0095603Golden flower (diploid) 331.967
CNS0095604Slightly white alabastrum(tetraploid) 130.141
CNS0095605Slightly white alabastrum(tetraploid) 225.538
CNS0095606Slightly white alabastrum(tetraploid) 359.161
CNS0095607Whole white alabastrum(tetraploid) 117.361
CNS0095608Whole white alabastrum(tetraploid) 216.203
CNS0095609Whole white alabastrum(tetraploid) 340.082
CNS0095610Silvery flower (tetraploid) 152.914
CNS0095611Silvery flower (tetraploid) 241.151
CNS0095612Silvery flower (tetraploid) 345.874
CNS0095613Golden flower (tetraploid) 133.807
CNS0095614Golden flower (tetraploid) 240.485
CNS0095615Golden flower (tetraploid) 334.316
CRA001975CRR073297Stem 145.128
CRR073298Stem 239.472
CRR073299Stem 336.001
CRR073300Leaf 144.176
CRR073301Leaf 244.652
CRR073302Leaf 346.524
CRR073303Juvenile bud 141.815
CRR073304Juvenile bud 235.732
CRR073305Juvenile bud 335.173
CRR073306Third green 123.269
CRR073307Third green 216.273
CRR073308Third green 323.088
CRR073309Second white 120.150
CRR073310Second white 228.852
CRR073311Second white 323.073
CRR073312Silver flowering 117.676
CRR073313Silver flowering 213.548
CRR073314Silver flowering 329.776
CRR073315Gold flowering 123.072
CRR073316Gold flowering 233.258
CRR073317Gold flowering 310.635
CRR073318Tawny withering 142.536
CRR073319Tawny withering 233.167
CRR073320Tawny withering 342.523