Gene detail

Detail information of GWHGAAZE026039

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006450435.1	0	hypothetical protein CICLE_v10007708mg [Citrus clementina]
COG	YP_007887.1	5E-21	hypothetical protein pc0888
Swissprot	tr\|Q9SKK0\|EBF1_ARATH	0	EIN3-binding F-box protein 1
trEMBL	tr\|V4UHK5\|V4UHK5_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR63675.1}
TAIR10	AT2G25490.1	0	EIN3-binding F box protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	72270715	72272634	+
GWHAAZE00000007	mRNA	72270715	72272634	+
GWHAAZE00000007	exon	72270715	72271033	+
GWHAAZE00000007	exon	72271088	72272634	+
GWHAAZE00000007	CDS	72270715	72271033	+
GWHAAZE00000007	CDS	72271088	72272634	+

Transcript Sequence
>GWHTAAZE026073 GGTAACCACGCTGACCTGTATTTTCCTACTCGCAAGAGGTCTCGCATCAGTGCTCCTTTTATCTTTAGTGGAGAAAGTTTTGAGAAGCAGCAGCCCTCTATTGATGTTCTTCCCGATGAGTGCCTTTTTGAAGTCTTTCGACGTATCGATGGAGGCCAAGATAGAAGCTCCTGTGCTTGTGTTTCCAAGCACTGGCTTATGCTACTAAGCAGCATCCACAGGGAAGAAACCTGCCCTAGAAAAAGTTCTTTATCTTCAGAGCCTGAGGGAAGATTGGTATCCGATAAGAAAGTCAAGTCATTTGAGACTACCAATAAGGAAATCGAGGGTGATGGTTACCTTTCTAGGTGTCTCGAAGGGAAGAAAGCTACCGATGTGAGACTTGCGGCAATTTCTGTTGGAACTGGTAGCCGTGGAGGATTGGGCAAGCTTTCTATCAGAGGATGCAATTCTAGCCGTGGGGTGACTAACCTTGGTCTCAAGGCCATTGCTCGTGGTTGCCCTTCCCTAAGGGTTCTTTCTCTGTGGAACGTATCTTCTGTTGGAGATGAAGGCCTTTCTGAAATTGCTAATGGGTGCCACATGCTGGAGAAGCTAGACCTTTGCCAGTGCCCAGCAATTTCTGACAAGGGTTTGTTGGCCATTGCGAAGGGCTGCCCTAATCTGGCCTCGATAACAGTAGAGTCTTGTTTGAACATTGGAAATGAAAGCCTTCAAGCTCTTGGCCGTTTTTGCCCCAACTTGAAGTCTATTTCAATCAGAAACTGCCCTCTTGTTGGAGATCAAGGAATCGCAAGTCTTTTCTCGTCAGCCAGCTGTGCCTTGAAAAACGTGAAACTTCAGGCTTTGAACTTAAGCGATGTGTCTCTTGCAGTTATGGGGCACTATGGCAAGTCAGTTACCAATCTATTGCTCACTGGCCTCCAGAATGTGACTGAGAGGGGGTTTTGGGTCATGGGTAATTGTCAGGGTTTGCAGAAATTGAGGTCGTTCTCAATCAGCGCTTGCCAAGGAATTACCGATTTGGGTGTTGAAGCCTTGGGGAAAGGTTGCCCAAATTTGAAGCAGCTGTGCCTTCGAAGATGCACGTTTTTATCAGACAACGGCTTGGTTTCTTTTGCCAAAGTTGCAGGTTCCCTCGAGAGCCTTCAGCTAGAAGAATGCCACAGGATTACCCAATCTGGGTTCTTTGGTGTCCTTGTTAATTGTGCTGAAAAGTTGAAGGCTCTTTCTTTAACAAACTGCTTGGGGTTCAAGGACATGGCCATCGGATTTCCTTTTCTGTCTCTCTGCAAATCCCTTCGATCTTTGTCAGTTCGTAACTGCCTTGGATTTGGTAATAATAGCTTGGCCATGGTGGGTAAACTGTGCCCTCAACTGCACAACGTGGTCCTTGCTGGGCTTAATGGAATAACAGATGATGGTTTGCTCCCACTTGTCAATAACTGTGAGGCTGGTCTATCAAAGGTCAGCCTTAGCGGCTGTGTAAACTTGACTGACAAAGTGGTTTCAACCATTGCCAAGCTTCATGGTTGGACCCTTGAACAGATGAACCTCGATAGCTGTAATATAACTGATGCAAGCTTGGTTTCCATTGCAGAGAACTGCTTATTGCTCAGTGAGCTCGATGTTTCAAAGTGTGTAGTCACCGATTCAGGCATTGCAGCCTTGGCCAGTGTAGGGCATCTCAATTTGCAGATTCTCTCTCTGTCGGGCTGCACTTTGGTATCCGACAAGAGCTTGCCTTTTTTGTGCGAATTGGGCGAGACCCTTGTGGGGTTGAACATCCAGCACTGTCGTGCTATTAGCAGTGGTACCATTGATCTGCTCGTGGAGAAACTATGGAGGTGTGATATCCTTTCCTAA

Network for GWHGAAZE026039

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13516.7	LRR_6	193	216	0.34
PF13516.7	LRR_6	245	267	1.9
PF13516.7	LRR_6	326	347	0.9
PF13516.7	LRR_6	538	558	0.18

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K14515	EBF1_2	MAPK signaling pathway - plant	map04016
K14515	EBF1_2	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	87.371
	SRR3591706	second leaf	62.606
	SRR3591707	mature leaf	88.420
	SRR3591708	Shoot apex	51.019
	SRR3591709	Stem	68.394
	SRR3591710	White floral bud	51.906
	SRR3591711	White flower	132.810
	SRR3591712	Green floral bud	24.928
	SRR3591713	Yellow flower	120.218
SRP173429	SRR8316895	Juvenile bud stage	5.423
	SRR8316896	Juvenile bud stage	11.128
	SRR8316897	Juvenile bud stage	3.057
	SRR8316894	Third green stage	20.723
	SRR8316900	Third green stage	60.238
	SRR8316901	Third green stage	46.359
	SRR8316898	Complete white stage	34.114
	SRR8316899	Complete white stage	95.704
	SRR8316903	Complete white stage	68.922
	SRR8316902	Silver flowering stage	33.981
	SRR8316904	Silver flowering stage	38.674
	SRR8316905	Silver flowering stage	19.185
	SRR8316906	Gold flowering stage	74.528
	SRR8316907	Gold flowering stage	64.659
	SRR8316908	Gold flowering stage	65.538
SRP132670	SRR6706286	Control	48.371
	SRR6706287	Light intensity 50%	55.625
	SRR6706288	Light intensity 20%	68.177
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.786
	CNS0095593	Slightly white alabastrum(diploid) 2	12.229
	CNS0095594	Slightly white alabastrum(diploid) 3	7.878
	CNS0095595	Whole white alabastrum(diploid) 2	16.120
	CNS0095596	Whole white alabastrum(diploid) 3	19.488
	CNS0095597	Whole white alabastrum(diploid) 4	10.629
	CNS0095598	Silvery flower (diploied) 1	17.314
	CNS0095599	Silvery flower (diploied) 2	11.857
	CNS0095600	Silvery flower (diploied) 3	100.710
	CNS0095601	Golden flower (diploid) 1	18.946
	CNS0095602	Golden flower (diploid) 2	82.747
	CNS0095603	Golden flower (diploid) 3	80.546
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.311
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.822
	CNS0095606	Slightly white alabastrum(tetraploid) 3	91.841
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.072
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.712
	CNS0095609	Whole white alabastrum(tetraploid) 3	54.002
	CNS0095610	Silvery flower (tetraploid) 1	91.866
	CNS0095611	Silvery flower (tetraploid) 2	87.924
	CNS0095612	Silvery flower (tetraploid) 3	44.416
	CNS0095613	Golden flower (tetraploid) 1	40.075
	CNS0095614	Golden flower (tetraploid) 2	80.615
	CNS0095615	Golden flower (tetraploid) 3	101.661
CRA001975	CRR073297	Stem 1	94.320
	CRR073298	Stem 2	101.885
	CRR073299	Stem 3	151.829
	CRR073300	Leaf 1	132.523
	CRR073301	Leaf 2	101.875
	CRR073302	Leaf 3	226.955
	CRR073303	Juvenile bud 1	138.942
	CRR073304	Juvenile bud 2	185.920
	CRR073305	Juvenile bud 3	166.941
	CRR073306	Third green 1	111.842
	CRR073307	Third green 2	146.523
	CRR073308	Third green 3	130.178
	CRR073309	Second white 1	252.789
	CRR073310	Second white 2	146.471
	CRR073311	Second white 3	214.135
	CRR073312	Silver flowering 1	206.111
	CRR073313	Silver flowering 2	284.368
	CRR073314	Silver flowering 3	206.608
	CRR073315	Gold flowering 1	49.974
	CRR073316	Gold flowering 2	61.677
	CRR073317	Gold flowering 3	117.156
	CRR073318	Tawny withering 1	105.008
	CRR073319	Tawny withering 2	68.316
	CRR073320	Tawny withering 3	91.971