Gene detail

Detail information of GWHGAAZE026038

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282629.2	0	PREDICTED: probable L-type lectin-domain containing receptor kinase S.7 [Vitis vinifera]
COG	YP_004571825.1	9E-25	serine/threonine protein kinase
Swissprot	tr\|Q9FHG4\|LRKS7_ARATH	6E-117	Probable L-type lectin-domain containing receptor kinase S.7 (Precursor)
trEMBL	tr\|F6H315\|F6H315_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46793.1}
TAIR10	AT5G55830.1	1E-95	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	72233621	72236648	+
GWHAAZE00000007	mRNA	72233621	72236648	+
GWHAAZE00000007	exon	72233621	72233927	+
GWHAAZE00000007	exon	72234333	72235073	+
GWHAAZE00000007	exon	72235834	72236648	+
GWHAAZE00000007	CDS	72233621	72233927	+
GWHAAZE00000007	CDS	72234333	72235073	+
GWHAAZE00000007	CDS	72235834	72236648	+

Transcript Sequence
>GWHTAAZE026072 ATGAGTTGTTCAAATAACAGCAAACTAATATGTATGGGTTCAGTTAATGCAAGCACTAATGGGAGTCTTTACTTAACAAAAGAGAACCAAGATGAGATAAATCAGATTGGAAGAGTACTGTATAGACAACCTGGACTTGCATGGCCAGCTTCTTTCTCTACTACTTTCACAGTTGTTATTGAAACTCAACACCCAAATTCTTCGCGATCCGGCGATGGTATGTCTTTCATCATTGCTCAGGACGACCGGCCTTCGCCGTCGGAAAGTTACGGCTCTTATATGGGAATTCTTGATAATTCAACTCAAGGTGGGCTTCTTAAACAATTAGCAGTGGAGCTAGACACATACAAAAATGAAGATGAGCCAGATGCGAACCACATAGCCATTGACACCGTTAGTGTCACTAACCCCCTTGCAATAAAAAGCCTCAACAGCTCAGGAATCAACCTCAAGAGTGGAAAACAAATCATCATTAAAATCATTTATGACGGCTGGAACAAAAGCCTACAAATTCACGCCGCATATACCGGAAATGCACTTACACTCATCCTTAATGAAACAATTATCATTGAAGAGACGGTCCCAAACCACGTTTATGTGGGCTTCACTGCATCCACCGGCTTTGCGTCCGAGACCCAACGCATTCTTAGTTGGAATTTCACATCCATGGAATTGCCAAATGAATCTCTGCTTCAAAACAATGGAAATGGGAATGGAAATAGAAATAGGACTAAGTTGATTTTGATTGTTGTGGTTCCAGTTTTGGTGGGGATTTTGGTTCTTGGGATTTTGGTAGGTCTATTTGTTGCCAGATTGATTAGGAGGAAGAATGAGAAGAGTTTGAGGCAAGAGAATATGGAAATGTTGACAAGGAACGCAGCAAATACACCTACTTGTTATAGTTATAAGAAACTTTTGAAGGCTACTAATAAGTTTAGTAAGGAAAATTTGTTGGGGAGTGGTGGATTTGGGAGTGTTTATAAAGGGGTTTTGTTGGATCCTCCTACAACTATTGCTGTTAAGAAAATTTCAGCTAATTCAAGCCAAGGTAACAGGGAGTACTTAGCAGAAATATGTACTATTGGACGCTTAAGGCACAAAAACTTACTACAACTCCAGGGTTGGTGCCATGATCATGACCAACTCCTCCTAGTGTATGAATTCATGCCTAACGGTAGCCTAGACAGATTCATTGGAAAAGCCTTTCTCAACTGGAGAACCCGGTATCATGTATTGACAGGGTTGGCATCAGTGCTCGTTTACCTCCACGAAGAATGCGACAACCCTGTCGTACACAGAGACGTAAAGCCAAGTAATGTCATGTTGGATTCTAACTATAGCGCTCACTTAGGTGACTTTGGCCTTGCTAGGTTGCTCCAGAATAACGCATCAGTTACAACCACGATGGCAGGTACTCCAGGATACCTGGCCCCAGAGGTGAGCTATACTGGCAAGGCCACGCCAGAGTCTGACGTATACAGCTTTGGAATGGTGGTACTAGAAGTTGTGTGTGGGAGGAGATCCAATGTGTTCATGGAAGAGAATAGTTTGGTGGATTTTGTGTGGAGTTTATATGAAAAAGGTGAATTGTTGAAGTGTGTGGATCAAATGCTTGAAGGTGAATTTGATGAAGAACAGGTGAGGAGGACTTTGATGGTTGGACTTGCTTGTTTGCATCTTGATTATACGTTGAGGCCAAGGATGAGAAAAATTGTTCAAATTTTTTTGAACCCTGAGGAGCTTTTGATGAATTTGCCCAAGTCGAGACCTAGAGCAATATATGTGCCATTGTTCTCTTCTCCAATTTCAAATTCATCTAATTTTGGCTCTAACGAAGCTACAACTTCTGTAGGCTCCATGTAA

Network for GWHGAAZE026038

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	6	227	1.10E-40
PF00069.26	Pkinase	313	573	1.10E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.515
	SRR3591706	second leaf	1.422
	SRR3591707	mature leaf	4.109
	SRR3591708	Shoot apex	2.319
	SRR3591709	Stem	3.478
	SRR3591710	White floral bud	1.815
	SRR3591711	White flower	1.935
	SRR3591712	Green floral bud	0.499
	SRR3591713	Yellow flower	0.511
SRP173429	SRR8316895	Juvenile bud stage	0.601
	SRR8316896	Juvenile bud stage	0.491
	SRR8316897	Juvenile bud stage	0.211
	SRR8316894	Third green stage	0.168
	SRR8316900	Third green stage	0.157
	SRR8316901	Third green stage	0.218
	SRR8316898	Complete white stage	0.060
	SRR8316899	Complete white stage	0.783
	SRR8316903	Complete white stage	0.178
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.111
	SRR8316905	Silver flowering stage	0.068
	SRR8316906	Gold flowering stage	0.157
	SRR8316907	Gold flowering stage	0.205
	SRR8316908	Gold flowering stage	0.209
SRP132670	SRR6706286	Control	2.519
	SRR6706287	Light intensity 50%	1.563
	SRR6706288	Light intensity 20%	0.836
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.533
	CNS0095593	Slightly white alabastrum(diploid) 2	0.420
	CNS0095594	Slightly white alabastrum(diploid) 3	0.696
	CNS0095595	Whole white alabastrum(diploid) 2	0.197
	CNS0095596	Whole white alabastrum(diploid) 3	0.048
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	3.349
	CNS0095599	Silvery flower (diploied) 2	1.631
	CNS0095600	Silvery flower (diploied) 3	0.408
	CNS0095601	Golden flower (diploid) 1	4.642
	CNS0095602	Golden flower (diploid) 2	2.171
	CNS0095603	Golden flower (diploid) 3	1.897
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.056
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.607
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.043
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.201
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.049
	CNS0095610	Silvery flower (tetraploid) 1	0.272
	CNS0095611	Silvery flower (tetraploid) 2	0.501
	CNS0095612	Silvery flower (tetraploid) 3	0.524
	CNS0095613	Golden flower (tetraploid) 1	0.065
	CNS0095614	Golden flower (tetraploid) 2	0.234
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.268
	CRR073298	Stem 2	0.840
	CRR073299	Stem 3	0.135
	CRR073300	Leaf 1	0.516
	CRR073301	Leaf 2	0.317
	CRR073302	Leaf 3	0.222
	CRR073303	Juvenile bud 1	0.068
	CRR073304	Juvenile bud 2	0.035
	CRR073305	Juvenile bud 3	0.178
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.008
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.003
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.690
	CRR073316	Gold flowering 2	2.785
	CRR073317	Gold flowering 3	2.810
	CRR073318	Tawny withering 1	2.935
	CRR073319	Tawny withering 2	4.184
	CRR073320	Tawny withering 3	0.428