Gene detail

Detail information of GWHGAAZE026031

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011081570.1	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X1 [Sesamum indicum]
COG	YP_684642.1	4E-70	ATP-dependent RNA helicase
Swissprot	tr\|Q9LFN6\|RH56_ARATH	0	DEAD-box ATP-dependent RNA helicase 56
trEMBL	tr\|A0A061GJ96\|A0A061GJ96_THECC	0	DEAD/DEAH box RNA helicase family protein isoform 2 {ECO:0000313\|EMBL:EOY29498.1}
TAIR10	AT5G11170.1	0	DEAD/DEAH box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	72094206	72103390	-
GWHAAZE00000007	mRNA	72094206	72103390	-
GWHAAZE00000007	exon	72103275	72103390	-
GWHAAZE00000007	exon	72100688	72100809	-
GWHAAZE00000007	exon	72099901	72100073	-
GWHAAZE00000007	exon	72099526	72099757	-
GWHAAZE00000007	exon	72099295	72099413	-
GWHAAZE00000007	exon	72098737	72098793	-
GWHAAZE00000007	exon	72097303	72097487	-
GWHAAZE00000007	exon	72095737	72095881	-
GWHAAZE00000007	exon	72095306	72095389	-
GWHAAZE00000007	exon	72095151	72095214	-
GWHAAZE00000007	exon	72094206	72094216	-
GWHAAZE00000007	CDS	72103275	72103390	-
GWHAAZE00000007	CDS	72100688	72100809	-
GWHAAZE00000007	CDS	72099901	72100073	-
GWHAAZE00000007	CDS	72099526	72099757	-
GWHAAZE00000007	CDS	72099295	72099413	-
GWHAAZE00000007	CDS	72098737	72098793	-
GWHAAZE00000007	CDS	72097303	72097487	-
GWHAAZE00000007	CDS	72095737	72095881	-
GWHAAZE00000007	CDS	72095306	72095389	-
GWHAAZE00000007	CDS	72095151	72095214	-
GWHAAZE00000007	CDS	72094206	72094216	-

Transcript Sequence
>GWHTAAZE026065 ATGGGAGAAACAAAGGACAACGACGCATACGAGGAGGAGCTTATTGATTACGAGGAGGAAGACGAGAAAGCACCTGATTCCGTCACCGCCAAAGTTAACGGCGAATCCGTCAAAAAGGGTTATGTAGGAATTCACAGTTCTGGATTCAGAGATTTCCTTTTGAAGCCAGAGCTTCTGCGGGCTATTGTCGACTCAGGGTTTGAGCATCCTTCTGAAGGCAAGATATTTTACATGTCTTTGCAACATGAGTGTATCCCTCAAGCCATCTTGGGCATGGACGTTATTTGCCAAGCAAAATCCGGGATGGGAAAAACTGCTGTTTTTGTTCTGTCAACTTTGCAACAAATTGAGCCTGTTGTGGGCCAAGTTGCTGCACTTGTTCTATGCCATACAAGGGAACTAGCTTATCAGATATGTCATGAATTTGAGAGGTTCAGCACTTACTTGCCTGATATAAAGGTGGCTGTCTTCTACGGTGGTGTTAATATTAAAATTCACAAGGACCTTCTGAAGAATGAATGCCCTCATATTGTTGTTGGAACACCTGGACGAATACTCGCACTTGCAAGAGATAAGGACCTTGCATTGAGGAATGTGAGGCATTTTATACTCGATGAATGTGACAAGATGCTCGAGTCGCTCGATATGAGGAGAGATGTGCAGGAAATATTCAAGATGACTCCTCATGATAAGCAGGTTATGATGTTTTCTGCAACACTGAGCAAGGAAATTCGGCCTGTCTGCAAGAAGTTTATGCAAGATCCTATGGAAATTTATGTTGACGACGAGGCAAAGTTGACCCTACATGGTCTTGTACAGCACTACATCAAACTGAGTGAGCTAGAGAAGAACCGCAAGTTGAATGACCTGCTAGATGCCCTGGACTTCAATCAAGTTGTAATATTCGTCAAAAGTGTGAGTCGAGCTGCTGAGCTGAACAAGTTACTTGTGGAGTGCAATTTTCCTTCTATCTGCATCCATTCTGGCATGTCTCAGGAGGAAAGGTTGACGCGATACAAGGGCTTTAAGGAGGGGCATAAGAGAATTCTTGTGGCAACAGATTTGGTGGGTAGGGGAATCGACATCGAGAGGGTTAACATTGTCATTAACTACGACATGCCGGATTCCGCAGACACTTACCTTCACAGGGTGGGTAGAGCTGGTAGGTTTGGGACCAAAGGGCTTGCAATTACGTTTGTTTCATCTGCTTCAGACTCCGATGTACTTAATCAGGTTCAGGAGAGGTTTGAGGTGGATATAAAGGAGCTTCCCGAGCAGATTGATACTTCTACATATATGCCATCTTAG

Network for GWHGAAZE026031

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	80	244	1.10E-36
PF00271.32	Helicase_C	284	391	2.10E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12812	DDX39B, UAP56, SUB2	Spliceosome	map03040
		RNA transport	map03013
		mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.280
	SRR3591706	second leaf	21.744
	SRR3591707	mature leaf	15.614
	SRR3591708	Shoot apex	47.119
	SRR3591709	Stem	26.620
	SRR3591710	White floral bud	19.553
	SRR3591711	White flower	21.835
	SRR3591712	Green floral bud	14.488
	SRR3591713	Yellow flower	14.147
SRP173429	SRR8316895	Juvenile bud stage	22.499
	SRR8316896	Juvenile bud stage	24.738
	SRR8316897	Juvenile bud stage	14.279
	SRR8316894	Third green stage	9.740
	SRR8316900	Third green stage	22.487
	SRR8316901	Third green stage	18.860
	SRR8316898	Complete white stage	7.256
	SRR8316899	Complete white stage	27.223
	SRR8316903	Complete white stage	12.760
	SRR8316902	Silver flowering stage	7.073
	SRR8316904	Silver flowering stage	8.967
	SRR8316905	Silver flowering stage	4.361
	SRR8316906	Gold flowering stage	16.264
	SRR8316907	Gold flowering stage	17.269
	SRR8316908	Gold flowering stage	21.534
SRP132670	SRR6706286	Control	21.512
	SRR6706287	Light intensity 50%	19.064
	SRR6706288	Light intensity 20%	19.586
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.678
	CNS0095593	Slightly white alabastrum(diploid) 2	16.435
	CNS0095594	Slightly white alabastrum(diploid) 3	15.918
	CNS0095595	Whole white alabastrum(diploid) 2	13.610
	CNS0095596	Whole white alabastrum(diploid) 3	12.141
	CNS0095597	Whole white alabastrum(diploid) 4	11.690
	CNS0095598	Silvery flower (diploied) 1	38.554
	CNS0095599	Silvery flower (diploied) 2	32.776
	CNS0095600	Silvery flower (diploied) 3	21.156
	CNS0095601	Golden flower (diploid) 1	30.316
	CNS0095602	Golden flower (diploid) 2	27.742
	CNS0095603	Golden flower (diploid) 3	27.194
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.577
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.416
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.571
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.843
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.647
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.381
	CNS0095610	Silvery flower (tetraploid) 1	26.395
	CNS0095611	Silvery flower (tetraploid) 2	31.539
	CNS0095612	Silvery flower (tetraploid) 3	36.088
	CNS0095613	Golden flower (tetraploid) 1	16.629
	CNS0095614	Golden flower (tetraploid) 2	20.550
	CNS0095615	Golden flower (tetraploid) 3	25.113
CRA001975	CRR073297	Stem 1	49.189
	CRR073298	Stem 2	48.826
	CRR073299	Stem 3	41.263
	CRR073300	Leaf 1	29.824
	CRR073301	Leaf 2	31.821
	CRR073302	Leaf 3	29.714
	CRR073303	Juvenile bud 1	24.351
	CRR073304	Juvenile bud 2	12.403
	CRR073305	Juvenile bud 3	26.384
	CRR073306	Third green 1	8.699
	CRR073307	Third green 2	5.893
	CRR073308	Third green 3	8.917
	CRR073309	Second white 1	7.953
	CRR073310	Second white 2	8.421
	CRR073311	Second white 3	5.360
	CRR073312	Silver flowering 1	6.933
	CRR073313	Silver flowering 2	8.658
	CRR073314	Silver flowering 3	6.903
	CRR073315	Gold flowering 1	33.177
	CRR073316	Gold flowering 2	52.191
	CRR073317	Gold flowering 3	35.435
	CRR073318	Tawny withering 1	36.709
	CRR073319	Tawny withering 2	27.848
	CRR073320	Tawny withering 3	32.382